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VersaCount: customizable manual tally software for cell counting
BACKGROUND: The manual counting of cells by microscopy is a commonly used technique across biological disciplines. Traditionally, hand tally counters have been used to track event counts. Although this method is adequate, there are a number of inefficiencies which arise when managing large numbers o...
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829563/ https://www.ncbi.nlm.nih.gov/pubmed/20180957 http://dx.doi.org/10.1186/1751-0473-5-1 |
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author | Kim, Charles C DeRisi, Joseph L |
author_facet | Kim, Charles C DeRisi, Joseph L |
author_sort | Kim, Charles C |
collection | PubMed |
description | BACKGROUND: The manual counting of cells by microscopy is a commonly used technique across biological disciplines. Traditionally, hand tally counters have been used to track event counts. Although this method is adequate, there are a number of inefficiencies which arise when managing large numbers of samples or large sample sizes. RESULTS: We describe software that mimics a traditional multi-register tally counter. Full customizability allows operation on any computer with minimal hardware requirements. The efficiency of counting large numbers of samples and/or large sample sizes is improved through the use of a "multi-count" register that allows single keystrokes to correspond to multiple events. Automatically updated multi-parameter values are implemented as user-specified equations, reducing errors and time required for manual calculations. The user interface was optimized for use with a touch screen and numeric keypad, eliminating the need for a full keyboard and mouse. CONCLUSIONS: Our software provides an inexpensive, flexible, and productivity-enhancing alternative to manual hand tally counters. |
format | Text |
id | pubmed-2829563 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-28295632010-02-28 VersaCount: customizable manual tally software for cell counting Kim, Charles C DeRisi, Joseph L Source Code Biol Med Software review BACKGROUND: The manual counting of cells by microscopy is a commonly used technique across biological disciplines. Traditionally, hand tally counters have been used to track event counts. Although this method is adequate, there are a number of inefficiencies which arise when managing large numbers of samples or large sample sizes. RESULTS: We describe software that mimics a traditional multi-register tally counter. Full customizability allows operation on any computer with minimal hardware requirements. The efficiency of counting large numbers of samples and/or large sample sizes is improved through the use of a "multi-count" register that allows single keystrokes to correspond to multiple events. Automatically updated multi-parameter values are implemented as user-specified equations, reducing errors and time required for manual calculations. The user interface was optimized for use with a touch screen and numeric keypad, eliminating the need for a full keyboard and mouse. CONCLUSIONS: Our software provides an inexpensive, flexible, and productivity-enhancing alternative to manual hand tally counters. BioMed Central 2010-01-13 /pmc/articles/PMC2829563/ /pubmed/20180957 http://dx.doi.org/10.1186/1751-0473-5-1 Text en Copyright ©2010 Kim and DeRisi; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software review Kim, Charles C DeRisi, Joseph L VersaCount: customizable manual tally software for cell counting |
title | VersaCount: customizable manual tally software for cell counting |
title_full | VersaCount: customizable manual tally software for cell counting |
title_fullStr | VersaCount: customizable manual tally software for cell counting |
title_full_unstemmed | VersaCount: customizable manual tally software for cell counting |
title_short | VersaCount: customizable manual tally software for cell counting |
title_sort | versacount: customizable manual tally software for cell counting |
topic | Software review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829563/ https://www.ncbi.nlm.nih.gov/pubmed/20180957 http://dx.doi.org/10.1186/1751-0473-5-1 |
work_keys_str_mv | AT kimcharlesc versacountcustomizablemanualtallysoftwareforcellcounting AT derisijosephl versacountcustomizablemanualtallysoftwareforcellcounting |