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Global Self-Regulation of the Cellular Metabolic Structure

BACKGROUND: Different studies have shown that cellular enzymatic activities are able to self-organize spontaneously, forming a metabolic core of reactive processes that remain active under different growth conditions while the rest of the molecular catalytic reactions exhibit structural plasticity....

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Autores principales: De la Fuente, Ildefonso M., Vadillo, Fernando, Pérez-Samartín, Alberto Luís, Pérez-Pinilla, Martín-Blas, Bidaurrazaga, Joseba, Vera-López, Antonio
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830472/
https://www.ncbi.nlm.nih.gov/pubmed/20209156
http://dx.doi.org/10.1371/journal.pone.0009484
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author De la Fuente, Ildefonso M.
Vadillo, Fernando
Pérez-Samartín, Alberto Luís
Pérez-Pinilla, Martín-Blas
Bidaurrazaga, Joseba
Vera-López, Antonio
author_facet De la Fuente, Ildefonso M.
Vadillo, Fernando
Pérez-Samartín, Alberto Luís
Pérez-Pinilla, Martín-Blas
Bidaurrazaga, Joseba
Vera-López, Antonio
author_sort De la Fuente, Ildefonso M.
collection PubMed
description BACKGROUND: Different studies have shown that cellular enzymatic activities are able to self-organize spontaneously, forming a metabolic core of reactive processes that remain active under different growth conditions while the rest of the molecular catalytic reactions exhibit structural plasticity. This global cellular metabolic structure appears to be an intrinsic characteristic common to all cellular organisms. Recent work performed with dissipative metabolic networks has shown that the fundamental element for the spontaneous emergence of this global self-organized enzymatic structure could be the number of catalytic elements in the metabolic networks. METHODOLOGY/PRINCIPAL FINDINGS: In order to investigate the factors that may affect the catalytic dynamics under a global metabolic structure characterized by the presence of metabolic cores we have studied different transitions in catalytic patterns belonging to a dissipative metabolic network. The data were analyzed using non-linear dynamics tools: power spectra, reconstructed attractors, long-term correlations, maximum Lyapunov exponent and Approximate Entropy; and we have found the emergence of self-regulation phenomena during the transitions in the metabolic activities. CONCLUSIONS/SIGNIFICANCE: The analysis has also shown that the chaotic numerical series analyzed correspond to the fractional Brownian motion and they exhibit long-term correlations and low Approximate Entropy indicating a high level of predictability and information during the self-regulation of the metabolic transitions. The results illustrate some aspects of the mechanisms behind the emergence of the metabolic self-regulation processes, which may constitute an important property of the global structure of the cellular metabolism.
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spelling pubmed-28304722010-03-05 Global Self-Regulation of the Cellular Metabolic Structure De la Fuente, Ildefonso M. Vadillo, Fernando Pérez-Samartín, Alberto Luís Pérez-Pinilla, Martín-Blas Bidaurrazaga, Joseba Vera-López, Antonio PLoS One Research Article BACKGROUND: Different studies have shown that cellular enzymatic activities are able to self-organize spontaneously, forming a metabolic core of reactive processes that remain active under different growth conditions while the rest of the molecular catalytic reactions exhibit structural plasticity. This global cellular metabolic structure appears to be an intrinsic characteristic common to all cellular organisms. Recent work performed with dissipative metabolic networks has shown that the fundamental element for the spontaneous emergence of this global self-organized enzymatic structure could be the number of catalytic elements in the metabolic networks. METHODOLOGY/PRINCIPAL FINDINGS: In order to investigate the factors that may affect the catalytic dynamics under a global metabolic structure characterized by the presence of metabolic cores we have studied different transitions in catalytic patterns belonging to a dissipative metabolic network. The data were analyzed using non-linear dynamics tools: power spectra, reconstructed attractors, long-term correlations, maximum Lyapunov exponent and Approximate Entropy; and we have found the emergence of self-regulation phenomena during the transitions in the metabolic activities. CONCLUSIONS/SIGNIFICANCE: The analysis has also shown that the chaotic numerical series analyzed correspond to the fractional Brownian motion and they exhibit long-term correlations and low Approximate Entropy indicating a high level of predictability and information during the self-regulation of the metabolic transitions. The results illustrate some aspects of the mechanisms behind the emergence of the metabolic self-regulation processes, which may constitute an important property of the global structure of the cellular metabolism. Public Library of Science 2010-03-02 /pmc/articles/PMC2830472/ /pubmed/20209156 http://dx.doi.org/10.1371/journal.pone.0009484 Text en De la Fuente et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
De la Fuente, Ildefonso M.
Vadillo, Fernando
Pérez-Samartín, Alberto Luís
Pérez-Pinilla, Martín-Blas
Bidaurrazaga, Joseba
Vera-López, Antonio
Global Self-Regulation of the Cellular Metabolic Structure
title Global Self-Regulation of the Cellular Metabolic Structure
title_full Global Self-Regulation of the Cellular Metabolic Structure
title_fullStr Global Self-Regulation of the Cellular Metabolic Structure
title_full_unstemmed Global Self-Regulation of the Cellular Metabolic Structure
title_short Global Self-Regulation of the Cellular Metabolic Structure
title_sort global self-regulation of the cellular metabolic structure
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830472/
https://www.ncbi.nlm.nih.gov/pubmed/20209156
http://dx.doi.org/10.1371/journal.pone.0009484
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