Cargando…

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

BACKGROUND: Several bioinformatic approaches have previously been used to find novel sites of ADAR mediated A-to-I RNA editing in human. These studies have discovered thousands of genes that are hyper-edited in their non-coding intronic regions, especially in alu retrotransposable elements, but very...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ensterö, Mats, Åkerborg, Örjan, Lundin, Daniel, Wang, Bei, Furey, Terrence S, Öhman, Marie, Lagergren, Jens
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831006/ https://www.ncbi.nlm.nih.gov/pubmed/20047656 http://dx.doi.org/10.1186/1471-2105-11-6

Ejemplares similares

Recognition and coupling of A-to-I edited sites are determined by the tertiary structure of the RNA
por: Ensterö, Mats, et al.
Publicado: (2009)

A method to find tissue-specific novel sites of selective adenosine deamination
por: Ohlson, Johan, et al.
Publicado: (2005)

Birth-death prior on phylogeny and speed dating
por: Åkerborg, Örjan, et al.
Publicado: (2008)

A-to-I editing of microRNAs in the mammalian brain increases during development
por: Ekdahl, Ylva, et al.
Publicado: (2012)

A distant cis acting intronic element induces site-selective RNA editing
por: Daniel, Chammiran, et al.
Publicado: (2012)

VIRGO: visualization of A-to-I RNA editing sites in genomic sequences
por: Distefano, Rosario, et al.
Publicado: (2013)

Spatiotemporal mapping of RNA editing in the developing mouse brain using in situ sequencing reveals regional and cell-type-specific regulation
por: Lundin, Elin, et al.
Publicado: (2020)

Improved Computational Target Site Prediction for Pentatricopeptide Repeat RNA Editing Factors
por: Takenaka, Mizuki, et al.
Publicado: (2013)

iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences
por: Chen, Wei, et al.
Publicado: (2016)

Differential Analysis of A-to-I mRNA Edited Sites in Parkinson’s Disease
por: Pozdyshev, Denis V., et al.
Publicado: (2021)

Escherichia coli HU protein has a role in the repair of abasic sites in DNA
por: Kow, Yoke W., et al.
Publicado: (2007)

Escherichia coli HU protein has a role in the repair of abasic sites in DNA
por: Kow, Yoke W., et al.
Publicado: (2009)

Splice-acceptor site mutation in p53 gene of hu888 zebrafish line
por: Piasecka, Alicja, et al.
Publicado: (2014)

HiCapTools: a software suite for probe design and proximity detection for targeted chromosome conformation capture applications
por: Anil, Anandashankar, et al.
Publicado: (2018)

FLUID PHASE DESTRUCTION OF C2(hu) BY C1(hu) : II. UNMASKING BY C4i(hu)OF C1(hu) SPECIFICITY FOR C2(hu)
por: Gigli, Irma, et al.
Publicado: (1969)

ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species
por: Chen, Ruyi, et al.
Publicado: (2023)

CRISPR-FRT targets shared sites in a knock-out collection for off-the-shelf genome editing
por: Swings, Toon, et al.
Publicado: (2018)

Genome-wide investigation and functional analysis of RNA editing sites in wheat
por: Rasool, Fatima, et al.
Publicado: (2022)

Identification of RNA editing sites in the SNP database
por: Eisenberg, Eli, et al.
Publicado: (2005)

Discriminating between HuR and TTP binding sites using the k-spectrum kernel method
por: Bhandare, Shweta, et al.
Publicado: (2017)

Editing inducer elements increases A-to-I editing efficiency in the mammalian transcriptome
por: Daniel, Chammiran, et al.
Publicado: (2017)

Neuron-specific ELAV/Hu proteins suppress HuR mRNA during neuronal differentiation by alternative polyadenylation
por: Mansfield, Kyle D., et al.
Publicado: (2012)

Cleavage of dsRNAs hyper-edited by ADARs occurs at preferred editing sites
por: Scadden, A. D. J., et al.
Publicado: (2005)

Prediction of constitutive A-to-I editing sites from human transcriptomes in the absence of genomic sequences
por: Zhu, Shanshan, et al.
Publicado: (2013)

RNA-binding protein HuR autoregulates its expression by promoting alternative polyadenylation site usage
por: Dai, Weijun, et al.
Publicado: (2012)

Correction: Discriminating between HuR and TTP binding sites using the k-spectrum kernel method
por: Bhandare, Shweta, et al.
Publicado: (2017)

Correction: genetic algorithm learning as a robust approach to RNA editing site site prediction
por: Thompson, James, et al.
Publicado: (2006)

Predicting sites of ADAR editing in double-stranded RNA
por: Eggington, Julie M., et al.
Publicado: (2011)

Genome Sequence-Independent Identification of RNA Editing Sites
por: Zhang, Qing, et al.
Publicado: (2015)

Elucidation of potential sites for antibody engineering by fluctuation editing
por: Yanaka, Saeko, et al.
Publicado: (2017)

Regulatory RNA Editing Sites in Cancer: Prediction and Beyond
por: Ruan, Hang, et al.
Publicado: (2017)

In utero nanoparticle delivery for site-specific genome editing
por: Ricciardi, Adele S., et al.
Publicado: (2018)

Genome-wide profiling of RNA editing sites in sheep
por: Zhang, Yuanyuan, et al.
Publicado: (2019)

Identifying microRNAs and Their Editing Sites in Macaca mulatta
por: Wang, Qingyi, et al.
Publicado: (2019)

Efficient and Specific Generation of MSTN-Edited Hu Sheep Using C-CRISPR
por: Guo, Rihong, et al.
Publicado: (2023)

A synthetic RNA editing factor edits its target site in chloroplasts and bacteria
por: Royan, Santana, et al.
Publicado: (2021)

An Editing-Site-Specific PCR Method for Detection and Quantification of CAO1-Edited Rice
por: Zhang, Hongwen, et al.
Publicado: (2021)

Site-directed A → I RNA editing as a therapeutic tool: moving beyond genetic mutations
por: Diaz Quiroz, Juan F., et al.
Publicado: (2023)

Tolerance to the Neuron-Specific Paraneoplastic HuD Antigen
por: DeLuca, Ilana, et al.
Publicado: (2009)

Anti-Hu antibodies activate enteric and sensory neurons
por: Li, Qin, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_1kp0qtd7d08s66sa4vsak112om