Cargando…

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

Motivation: Next-generation sequencing (NGS) has enabled whole genome and transcriptome single nucleotide variant (SNV) discovery in cancer. NGS produces millions of short sequence reads that, once aligned to a reference genome sequence, can be interpreted for the presence of SNVs. Although tools ex...

Descripción completa

Detalles Bibliográficos
Autores principales:	Goya, Rodrigo, Sun, Mark G.F., Morin, Ryan D., Leung, Gillian, Ha, Gavin, Wiegand, Kimberley C., Senz, Janine, Crisan, Anamaria, Marra, Marco A., Hirst, Martin, Huntsman, David, Murphy, Kevin P., Aparicio, Sam, Shah, Sohrab P.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2010
Materias:	Original Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832826/ https://www.ncbi.nlm.nih.gov/pubmed/20130035 http://dx.doi.org/10.1093/bioinformatics/btq040

Ejemplares similares

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
por: Roth, Andrew, et al.
Publicado: (2012)

Mutation Discovery in Regions of Segmental Cancer Genome Amplifications with CoNAn-SNV: A Mixture Model for Next Generation Sequencing of Tumors
por: Crisan, Anamaria, et al.
Publicado: (2012)

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
por: Ha, Gavin, et al.
Publicado: (2012)

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
por: McPherson, Andrew, et al.
Publicado: (2011)

Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden
por: Anglesio, Michael S, et al.
Publicado: (2015)

Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research
por: Anglesio, Michael S., et al.
Publicado: (2013)

Correction: Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research
por: Anglesio, Michael S., et al.
Publicado: (2013)

Correction: Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research
por: Anglesio, Michael S., et al.
Publicado: (2013)

Rare APC promoter 1B variants in gastric cancer kindreds unselected for fundic gland polyposis
por: Dixon, Katherine, et al.
Publicado: (2021)

The Oncogenic Roles of DICER1 RNase IIIb Domain Mutations in Ovarian Sertoli-Leydig Cell Tumors()()
por: Wang, Yemin, et al.
Publicado: (2015)

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer
por: Bashashati, Ali, et al.
Publicado: (2012)

Graciousness is next to godliness: treat competitors, colleagues, employees, and customers with respect
por: Huntsman, Jon M, et al.
Publicado: (2010)

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling
por: Bashashati, Ali, et al.
Publicado: (2013)

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data
por: Ding, Jiarui, et al.
Publicado: (2012)

Hereditary diffuse gastric cancer: association with lobular breast cancer
por: Schrader, Kasmintan A., et al.
Publicado: (2007)

MicroRNA Profiling of BRCA1/2 Mutation-Carrying and Non-Mutation-Carrying High-Grade Serous Carcinomas of Ovary
por: Lee, Cheng-Han, et al.
Publicado: (2009)

The Specificity of the FOXL2 c.402C>G Somatic Mutation: A Survey of Solid Tumors
por: Schrader, Kasmintan A., et al.
Publicado: (2009)

Virtual Terminator nucleotides for next generation DNA sequencing
por: Bowers, Jayson, et al.
Publicado: (2009)

Next-to-Leading QCD Corrections to $B \to X_{s} \gamma $ in Supersymmetry
por: Ciuchini, Marco, et al.
Publicado: (1998)

Next-generation sequencing technologies for detection of modified nucleotides in RNAs
por: Schwartz, Schraga, et al.
Publicado: (2016)

SNVHMM: predicting single nucleotide variants from next generation sequencing
por: Bian, Jiawen, et al.
Publicado: (2013)

Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
por: Dunn, Joshua G., et al.
Publicado: (2016)

Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species
por: Taylor, Mariah K., et al.
Publicado: (2020)

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types
por: Ding, Jiarui, et al.
Publicado: (2015)

Identification of Mg(2+) ions next to nucleotides in cryo-EM maps using electrostatic potential maps
por: Wang, Jimin, et al.
Publicado: (2021)

High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing
por: de Paz, Alexandra M, et al.
Publicado: (2018)

Nucleotide-resolution DNA double-strand breaks mapping by next-generation sequencing
por: Crosetto, Nicola, et al.
Publicado: (2013)

Generating orthogonal glycosyltransferase and nucleotide sugar pairs as next-generation glycobiology tools
por: Cioce, Anna, et al.
Publicado: (2021)

Corrigendum: Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species
por: Taylor, Mariah K., et al.
Publicado: (2022)

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
por: Ha, Gavin, et al.
Publicado: (2014)

ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data
por: Salehi, Sohrab, et al.
Publicado: (2017)

In‐depth molecular profiling of the biphasic components of uterine carcinosarcomas
por: McConechy, Melissa K, et al.
Publicado: (2015)

An optimized targeted Next-Generation Sequencing approach for sensitive detection of single nucleotide variants
por: Stasik, S., et al.
Publicado: (2018)

Detection of Single-Nucleotide and Copy Number Defects Underlying Hyperphenylalaninemia by Next-Generation Sequencing
por: Tendi, Elisabetta Anna, et al.
Publicado: (2023)

A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
por: Crisan, Anamaria, et al.
Publicado: (2019)

Inter-observer reproducibility of HER2 immunohistochemical assessment and concordance with fluorescent in situ hybridization (FISH): pathologist assessment compared to quantitative image analysis
por: Turashvili, Gulisa, et al.
Publicado: (2009)

Cross-cancer profiling of molecular alterations within the human autophagy interaction network
por: Lebovitz, Chandra B, et al.
Publicado: (2015)

Investigation of NADH Binding, Hydride Transfer, and NAD(+) Dissociation during NADH Oxidation by Mitochondrial Complex I Using Modified Nicotinamide Nucleotides
por: Birrell, James A., et al.
Publicado: (2013)

Subcontratación y responsabilidad solidaria en Pemex refinación/
por: Sénz Soto, José Luis
Publicado: (2011)

A clinically applicable molecular-based classification for endometrial cancers
por: Talhouk, A, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_euhmsrmvferp9nk1lfnblrdpph