Cargando…

Dynamic metabolomic data analysis: a tutorial review

In metabolomics, time-resolved, dynamic or temporal data is more and more collected. The number of methods to analyze such data, however, is very limited and in most cases the dynamic nature of the data is not even taken into account. This paper reviews current methods in use for analyzing dynamic m...

Descripción completa

Detalles Bibliográficos
Autores principales: Smilde, A. K., Westerhuis, J. A., Hoefsloot, H. C. J., Bijlsma, S., Rubingh, C. M., Vis, D. J., Jellema, R. H., Pijl, H., Roelfsema, F., van der Greef, J.
Formato: Texto
Lenguaje:English
Publicado: Springer US 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2834778/
https://www.ncbi.nlm.nih.gov/pubmed/20339444
http://dx.doi.org/10.1007/s11306-009-0191-1
_version_ 1782178613985017856
author Smilde, A. K.
Westerhuis, J. A.
Hoefsloot, H. C. J.
Bijlsma, S.
Rubingh, C. M.
Vis, D. J.
Jellema, R. H.
Pijl, H.
Roelfsema, F.
van der Greef, J.
author_facet Smilde, A. K.
Westerhuis, J. A.
Hoefsloot, H. C. J.
Bijlsma, S.
Rubingh, C. M.
Vis, D. J.
Jellema, R. H.
Pijl, H.
Roelfsema, F.
van der Greef, J.
author_sort Smilde, A. K.
collection PubMed
description In metabolomics, time-resolved, dynamic or temporal data is more and more collected. The number of methods to analyze such data, however, is very limited and in most cases the dynamic nature of the data is not even taken into account. This paper reviews current methods in use for analyzing dynamic metabolomic data. Moreover, some methods from other fields of science that may be of use to analyze such dynamic metabolomics data are described in some detail. The methods are put in a general framework after providing a formal definition on what constitutes a ‘dynamic’ method. Some of the methods are illustrated with real-life metabolomics examples.
format Text
id pubmed-2834778
institution National Center for Biotechnology Information
language English
publishDate 2009
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-28347782010-03-24 Dynamic metabolomic data analysis: a tutorial review Smilde, A. K. Westerhuis, J. A. Hoefsloot, H. C. J. Bijlsma, S. Rubingh, C. M. Vis, D. J. Jellema, R. H. Pijl, H. Roelfsema, F. van der Greef, J. Metabolomics Review Article In metabolomics, time-resolved, dynamic or temporal data is more and more collected. The number of methods to analyze such data, however, is very limited and in most cases the dynamic nature of the data is not even taken into account. This paper reviews current methods in use for analyzing dynamic metabolomic data. Moreover, some methods from other fields of science that may be of use to analyze such dynamic metabolomics data are described in some detail. The methods are put in a general framework after providing a formal definition on what constitutes a ‘dynamic’ method. Some of the methods are illustrated with real-life metabolomics examples. Springer US 2009-12-04 2010 /pmc/articles/PMC2834778/ /pubmed/20339444 http://dx.doi.org/10.1007/s11306-009-0191-1 Text en © The Author(s) 2009 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Review Article
Smilde, A. K.
Westerhuis, J. A.
Hoefsloot, H. C. J.
Bijlsma, S.
Rubingh, C. M.
Vis, D. J.
Jellema, R. H.
Pijl, H.
Roelfsema, F.
van der Greef, J.
Dynamic metabolomic data analysis: a tutorial review
title Dynamic metabolomic data analysis: a tutorial review
title_full Dynamic metabolomic data analysis: a tutorial review
title_fullStr Dynamic metabolomic data analysis: a tutorial review
title_full_unstemmed Dynamic metabolomic data analysis: a tutorial review
title_short Dynamic metabolomic data analysis: a tutorial review
title_sort dynamic metabolomic data analysis: a tutorial review
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2834778/
https://www.ncbi.nlm.nih.gov/pubmed/20339444
http://dx.doi.org/10.1007/s11306-009-0191-1
work_keys_str_mv AT smildeak dynamicmetabolomicdataanalysisatutorialreview
AT westerhuisja dynamicmetabolomicdataanalysisatutorialreview
AT hoefsloothcj dynamicmetabolomicdataanalysisatutorialreview
AT bijlsmas dynamicmetabolomicdataanalysisatutorialreview
AT rubinghcm dynamicmetabolomicdataanalysisatutorialreview
AT visdj dynamicmetabolomicdataanalysisatutorialreview
AT jellemarh dynamicmetabolomicdataanalysisatutorialreview
AT pijlh dynamicmetabolomicdataanalysisatutorialreview
AT roelfsemaf dynamicmetabolomicdataanalysisatutorialreview
AT vandergreefj dynamicmetabolomicdataanalysisatutorialreview