Cargando…

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

BACKGROUND: The presence of closely related genomes in polyploid species makes the assembly of total genomic sequence from shotgun sequence reads produced by the current sequencing platforms exceedingly difficult, if not impossible. Genomes of polyploid species could be sequenced following the order...

Descripción completa

Detalles Bibliográficos
Autores principales:	Luo, Ming-Cheng, Ma, Yaqin, You, Frank M, Anderson, Olin D, Kopecký, David, Šimková, Hana, Šafář, Jan, Doležel, Jaroslav, Gill, Bikram, McGuire, Patrick E, Dvorak, Jan
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836288/ https://www.ncbi.nlm.nih.gov/pubmed/20170511 http://dx.doi.org/10.1186/1471-2164-11-122

Ejemplares similares

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat
por: Sehgal, Sunish K, et al.
Publicado: (2012)

Chromosomes in the flow to simplify genome analysis
por: Doležel, Jaroslav, et al.
Publicado: (2012)

A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS)
por: Šimková, Hana, et al.
Publicado: (2008)

BAC Libraries from Wheat Chromosome 7D: Efficient Tool for Positional Cloning of Aphid Resistance Genes
por: Šimková, Hana, et al.
Publicado: (2011)

Chromosome Pairing in Polyploid Grasses
por: Svačina, Radim, et al.
Publicado: (2020)

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R
por: Bartoš, Jan, et al.
Publicado: (2008)

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley
por: Šimková, Hana, et al.
Publicado: (2008)

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A
por: Poursarebani, Naser, et al.
Publicado: (2014)

A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms
por: Luo, Ming-Cheng, et al.
Publicado: (2009)

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements
por: Akpinar, Bala Ani, et al.
Publicado: (2015)

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS
por: Fleury, Delphine, et al.
Publicado: (2010)

One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are
por: Doležel, Jaroslav, et al.
Publicado: (2018)

Features of the organization of bread wheat chromosome 5BS based on physical mapping
por: Salina, Elena A., et al.
Publicado: (2018)

Mitotic chromosome organization: General rules meet species-specific variability
por: Beseda, Tomáš, et al.
Publicado: (2020)

Sequence Composition and Gene Content of the Short Arm of Rye (Secale cereale) Chromosome 1
por: Fluch, Silvia, et al.
Publicado: (2012)

Chromosome Isolation by Flow Sorting in Aegilops umbellulata and Ae. comosa and Their Allotetraploid Hybrids Ae. biuncialis and Ae. geniculata
por: Molnár, István, et al.
Publicado: (2011)

Correction: Chromosome Isolation by Flow Sorting in Aegilops umbellulata and Ae. comosa and Their Allotetraploid Hybrids Ae. biuncialis and Ae. geniculata
por: Molnár, István, et al.
Publicado: (2011)

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications
por: Lucas, Stuart J, et al.
Publicado: (2014)

Divergence between bread wheat and Triticum militinae in the powdery mildew resistance QPm.tut-4A locus and its implications for cloning of the resistance gene
por: Janáková, Eva, et al.
Publicado: (2018)

Genomic Diversity in Two Related Plant Species with and without Sex Chromosomes - Silene latifolia and S. vulgaris
por: Cegan, Radim, et al.
Publicado: (2012)

Physical Mapping Integrated with Syntenic Analysis to Characterize the Gene Space of the Long Arm of Wheat Chromosome 1A
por: Lucas, Stuart J., et al.
Publicado: (2013)

Construction of Fully Segregated Genomic Libraries in Polyploid Organisms Such as Synechocystis sp. PCC 6803
por: Caicedo-Burbano, Patricia, et al.
Publicado: (2020)

The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and wheat single-gene probes
por: Said, Mahmoud, et al.
Publicado: (2018)

A Physical Map of the Short Arm of Wheat Chromosome 1A
por: Breen, James, et al.
Publicado: (2013)

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B
por: Dvorak, Jan, et al.
Publicado: (2018)

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat
por: Bartoš, Jan, et al.
Publicado: (2012)

Construction and Characterization of Three Wheat Bacterial Artificial Chromosome Libraries
por: Cao, Wenjin, et al.
Publicado: (2014)

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
por: Staňková, Helena, et al.
Publicado: (2016)

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
por: Akhunov, Eduard, et al.
Publicado: (2009)

Flow cytometric characterisation of the complex polyploid genome of Saccharum officinarum and modern sugarcane cultivars
por: Metcalfe, Cushla J., et al.
Publicado: (2019)

Construction and characterization of a bacterial artificial chromosome library for Gossypium mustelinum
por: Liu, Yuling, et al.
Publicado: (2018)

Rapid Chromosome Evolution in Recently Formed Polyploids in Tragopogon (Asteraceae)
por: Lim, K. Yoong, et al.
Publicado: (2008)

Influence of Skin Diseases on Fingerprint Recognition
por: Drahansky, Martin, et al.
Publicado: (2012)

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat
por: Philippe, Romain, et al.
Publicado: (2013)

β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
por: Fujikura, Kohei, et al.
Publicado: (2017)

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
por: Belova, Tatiana, et al.
Publicado: (2013)

The Enigma of Progressively Partial Endoreplication: New Insights Provided by Flow Cytometry and Next-Generation Sequencing
por: Hřibová, Eva, et al.
Publicado: (2016)

Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.)
por: Lee, Mi-Kyung, et al.
Publicado: (2013)

Nuclear Disposition of Alien Chromosome Introgressions into Wheat and Rye Using 3D-FISH
por: Koláčková, Veronika, et al.
Publicado: (2019)

Instability of Alien Chromosome Introgressions in Wheat Associated with Improper Positioning in the Nucleus
por: Perničková, Kateřina, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_s1hkipbuse9je48ovm8168505h