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Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama

BACKGROUND: A site near Tuskegee, Alabama was examined for vector-host activities of eastern equine encephalomyelitis virus (EEEV). Land cover maps of the study site were created in ArcInfo 9.2(® )from QuickBird data encompassing visible and near-infrared (NIR) band information (0.45 to 0.72 μm) acq...

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Autores principales: Jacob, Benjamin G, Burkett-Cadena, Nathan D, Luvall, Jeffrey C, Parcak, Sarah H, McClure, Christopher JW, Estep, Laura K, Hill, Geoffrey E, Cupp, Eddie W, Novak, Robert J, Unnasch, Thomas R
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2841590/
https://www.ncbi.nlm.nih.gov/pubmed/20181267
http://dx.doi.org/10.1186/1476-072X-9-12
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author Jacob, Benjamin G
Burkett-Cadena, Nathan D
Luvall, Jeffrey C
Parcak, Sarah H
McClure, Christopher JW
Estep, Laura K
Hill, Geoffrey E
Cupp, Eddie W
Novak, Robert J
Unnasch, Thomas R
author_facet Jacob, Benjamin G
Burkett-Cadena, Nathan D
Luvall, Jeffrey C
Parcak, Sarah H
McClure, Christopher JW
Estep, Laura K
Hill, Geoffrey E
Cupp, Eddie W
Novak, Robert J
Unnasch, Thomas R
author_sort Jacob, Benjamin G
collection PubMed
description BACKGROUND: A site near Tuskegee, Alabama was examined for vector-host activities of eastern equine encephalomyelitis virus (EEEV). Land cover maps of the study site were created in ArcInfo 9.2(® )from QuickBird data encompassing visible and near-infrared (NIR) band information (0.45 to 0.72 μm) acquired July 15, 2008. Georeferenced mosquito and bird sampling sites, and their associated land cover attributes from the study site, were overlaid onto the satellite data. SAS 9.1.4(® )was used to explore univariate statistics and to generate regression models using the field and remote-sampled mosquito and bird data. Regression models indicated that Culex erracticus and Northern Cardinals were the most abundant mosquito and bird species, respectively. Spatial linear prediction models were then generated in Geostatistical Analyst Extension of ArcGIS 9.2(®). Additionally, a model of the study site was generated, based on a Digital Elevation Model (DEM), using ArcScene extension of ArcGIS 9.2(®). RESULTS: For total mosquito count data, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 5.041 km, nugget of 6.325 km, lag size of 7.076 km, and range of 31.43 km, using 12 lags. For total adult Cx. erracticus count, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 5.764 km, nugget of 6.114 km, lag size of 7.472 km, and range of 32.62 km, using 12 lags. For the total bird count data, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 4.998 km, nugget of 5.413 km, lag size of 7.549 km and range of 35.27 km, using 12 lags. For the Northern Cardinal count data, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 6.387 km, nugget of 5.935 km, lag size of 8.549 km and a range of 41.38 km, using 12 lags. Results of the DEM analyses indicated a statistically significant inverse linear relationship between total sampled mosquito data and elevation (R(2 )= -.4262; p < .0001), with a standard deviation (SD) of 10.46, and total sampled bird data and elevation (R(2 )= -.5111; p < .0001), with a SD of 22.97. DEM statistics also indicated a significant inverse linear relationship between total sampled Cx. erracticus data and elevation (R(2 )= -.4711; p < .0001), with a SD of 11.16, and the total sampled Northern Cardinal data and elevation (R(2 )= -.5831; p < .0001), SD of 11.42. CONCLUSION: These data demonstrate that GIS/remote sensing models and spatial statistics can capture space-varying functional relationships between field-sampled mosquito and bird parameters for determining risk for EEEV transmission.
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spelling pubmed-28415902010-03-19 Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama Jacob, Benjamin G Burkett-Cadena, Nathan D Luvall, Jeffrey C Parcak, Sarah H McClure, Christopher JW Estep, Laura K Hill, Geoffrey E Cupp, Eddie W Novak, Robert J Unnasch, Thomas R Int J Health Geogr Research BACKGROUND: A site near Tuskegee, Alabama was examined for vector-host activities of eastern equine encephalomyelitis virus (EEEV). Land cover maps of the study site were created in ArcInfo 9.2(® )from QuickBird data encompassing visible and near-infrared (NIR) band information (0.45 to 0.72 μm) acquired July 15, 2008. Georeferenced mosquito and bird sampling sites, and their associated land cover attributes from the study site, were overlaid onto the satellite data. SAS 9.1.4(® )was used to explore univariate statistics and to generate regression models using the field and remote-sampled mosquito and bird data. Regression models indicated that Culex erracticus and Northern Cardinals were the most abundant mosquito and bird species, respectively. Spatial linear prediction models were then generated in Geostatistical Analyst Extension of ArcGIS 9.2(®). Additionally, a model of the study site was generated, based on a Digital Elevation Model (DEM), using ArcScene extension of ArcGIS 9.2(®). RESULTS: For total mosquito count data, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 5.041 km, nugget of 6.325 km, lag size of 7.076 km, and range of 31.43 km, using 12 lags. For total adult Cx. erracticus count, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 5.764 km, nugget of 6.114 km, lag size of 7.472 km, and range of 32.62 km, using 12 lags. For the total bird count data, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 4.998 km, nugget of 5.413 km, lag size of 7.549 km and range of 35.27 km, using 12 lags. For the Northern Cardinal count data, a first-order trend ordinary kriging process was fitted to the semivariogram at a partial sill of 6.387 km, nugget of 5.935 km, lag size of 8.549 km and a range of 41.38 km, using 12 lags. Results of the DEM analyses indicated a statistically significant inverse linear relationship between total sampled mosquito data and elevation (R(2 )= -.4262; p < .0001), with a standard deviation (SD) of 10.46, and total sampled bird data and elevation (R(2 )= -.5111; p < .0001), with a SD of 22.97. DEM statistics also indicated a significant inverse linear relationship between total sampled Cx. erracticus data and elevation (R(2 )= -.4711; p < .0001), with a SD of 11.16, and the total sampled Northern Cardinal data and elevation (R(2 )= -.5831; p < .0001), SD of 11.42. CONCLUSION: These data demonstrate that GIS/remote sensing models and spatial statistics can capture space-varying functional relationships between field-sampled mosquito and bird parameters for determining risk for EEEV transmission. BioMed Central 2010-02-24 /pmc/articles/PMC2841590/ /pubmed/20181267 http://dx.doi.org/10.1186/1476-072X-9-12 Text en Copyright ©2010 Jacob et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Jacob, Benjamin G
Burkett-Cadena, Nathan D
Luvall, Jeffrey C
Parcak, Sarah H
McClure, Christopher JW
Estep, Laura K
Hill, Geoffrey E
Cupp, Eddie W
Novak, Robert J
Unnasch, Thomas R
Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama
title Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama
title_full Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama
title_fullStr Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama
title_full_unstemmed Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama
title_short Developing GIS-based eastern equine encephalitis vector-host models in Tuskegee, Alabama
title_sort developing gis-based eastern equine encephalitis vector-host models in tuskegee, alabama
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2841590/
https://www.ncbi.nlm.nih.gov/pubmed/20181267
http://dx.doi.org/10.1186/1476-072X-9-12
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