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A modular positive feedback-based gene amplifier

BACKGROUND: Positive feedback is a common mechanism used in the regulation of many gene circuits as it can amplify the response to inducers and also generate binary outputs and hysteresis. In the context of electrical circuit design, positive feedback is often considered in the design of amplifiers....

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Autores principales: Nistala, Goutam J, Wu, Kang, Rao, Christopher V, Bhalerao, Kaustubh D
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2845093/
https://www.ncbi.nlm.nih.gov/pubmed/20187959
http://dx.doi.org/10.1186/1754-1611-4-4
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author Nistala, Goutam J
Wu, Kang
Rao, Christopher V
Bhalerao, Kaustubh D
author_facet Nistala, Goutam J
Wu, Kang
Rao, Christopher V
Bhalerao, Kaustubh D
author_sort Nistala, Goutam J
collection PubMed
description BACKGROUND: Positive feedback is a common mechanism used in the regulation of many gene circuits as it can amplify the response to inducers and also generate binary outputs and hysteresis. In the context of electrical circuit design, positive feedback is often considered in the design of amplifiers. Similar approaches, therefore, may be used for the design of amplifiers in synthetic gene circuits with applications, for example, in cell-based sensors. RESULTS: We developed a modular positive feedback circuit that can function as a genetic signal amplifier, heightening the sensitivity to inducer signals as well as increasing maximum expression levels without the need for an external cofactor. The design utilizes a constitutively active, autoinducer-independent variant of the quorum-sensing regulator LuxR. We experimentally tested the ability of the positive feedback module to separately amplify the output of a one-component tetracycline sensor and a two-component aspartate sensor. In each case, the positive feedback module amplified the response to the respective inducers, both with regards to the dynamic range and sensitivity. CONCLUSIONS: The advantage of our design is that the actual feedback mechanism depends only on a single gene and does not require any other modulation. Furthermore, this circuit can amplify any transcriptional signal, not just one encoded within the circuit or tuned by an external inducer. As our design is modular, it can potentially be used as a component in the design of more complex synthetic gene circuits.
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spelling pubmed-28450932010-03-26 A modular positive feedback-based gene amplifier Nistala, Goutam J Wu, Kang Rao, Christopher V Bhalerao, Kaustubh D J Biol Eng Research BACKGROUND: Positive feedback is a common mechanism used in the regulation of many gene circuits as it can amplify the response to inducers and also generate binary outputs and hysteresis. In the context of electrical circuit design, positive feedback is often considered in the design of amplifiers. Similar approaches, therefore, may be used for the design of amplifiers in synthetic gene circuits with applications, for example, in cell-based sensors. RESULTS: We developed a modular positive feedback circuit that can function as a genetic signal amplifier, heightening the sensitivity to inducer signals as well as increasing maximum expression levels without the need for an external cofactor. The design utilizes a constitutively active, autoinducer-independent variant of the quorum-sensing regulator LuxR. We experimentally tested the ability of the positive feedback module to separately amplify the output of a one-component tetracycline sensor and a two-component aspartate sensor. In each case, the positive feedback module amplified the response to the respective inducers, both with regards to the dynamic range and sensitivity. CONCLUSIONS: The advantage of our design is that the actual feedback mechanism depends only on a single gene and does not require any other modulation. Furthermore, this circuit can amplify any transcriptional signal, not just one encoded within the circuit or tuned by an external inducer. As our design is modular, it can potentially be used as a component in the design of more complex synthetic gene circuits. BioMed Central 2010-02-26 /pmc/articles/PMC2845093/ /pubmed/20187959 http://dx.doi.org/10.1186/1754-1611-4-4 Text en Copyright ©2010 Nistala et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Nistala, Goutam J
Wu, Kang
Rao, Christopher V
Bhalerao, Kaustubh D
A modular positive feedback-based gene amplifier
title A modular positive feedback-based gene amplifier
title_full A modular positive feedback-based gene amplifier
title_fullStr A modular positive feedback-based gene amplifier
title_full_unstemmed A modular positive feedback-based gene amplifier
title_short A modular positive feedback-based gene amplifier
title_sort modular positive feedback-based gene amplifier
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2845093/
https://www.ncbi.nlm.nih.gov/pubmed/20187959
http://dx.doi.org/10.1186/1754-1611-4-4
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