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Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States
Three new species of Leohumicola (anamorphic Leotiomycetes) are described using morphological characters and phylogenetic analyses of DNA barcodes. Leohumicola levissima and L. atra were isolated from soils collected after forest fires in Crater Lake National Park, United States. Leohumicola incrust...
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Formato: | Texto |
Lenguaje: | English |
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Nationaal Herbarium Nederland & Centraallbureau voor Schimmelcultures
2008
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846127/ https://www.ncbi.nlm.nih.gov/pubmed/20396577 http://dx.doi.org/10.3767/003158508X361334 |
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author | Nguyen, H.D.T. Seifert, K.A. |
author_facet | Nguyen, H.D.T. Seifert, K.A. |
author_sort | Nguyen, H.D.T. |
collection | PubMed |
description | Three new species of Leohumicola (anamorphic Leotiomycetes) are described using morphological characters and phylogenetic analyses of DNA barcodes. Leohumicola levissima and L. atra were isolated from soils collected after forest fires in Crater Lake National Park, United States. Leohumicola incrustata was isolated from burned fynbos from the Cape of Good Hope Nature Reserve, South Africa. The three species exhibit characteristic Leohumicola morphology but are morphologically distinct based on conidial characters. Two DNA barcode regions, the Internal Transcribed Spacer (ITS) nuclear rDNA region and the cytochrome oxidase subunit I (Cox1) mitochondrial gene, were sequenced. Single-gene parsimony, dual-gene parsimony and dual-gene Bayesian inference phylogenetic analyses support L. levissima, L. atra, L. incrustata as distinct phylogenetic species. Both ITS and Cox1 barcodes are effective for the molecular identification of Leohumicola species. |
format | Text |
id | pubmed-2846127 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Nationaal Herbarium Nederland & Centraallbureau voor Schimmelcultures |
record_format | MEDLINE/PubMed |
spelling | pubmed-28461272010-04-14 Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States Nguyen, H.D.T. Seifert, K.A. Persoonia Research Article Three new species of Leohumicola (anamorphic Leotiomycetes) are described using morphological characters and phylogenetic analyses of DNA barcodes. Leohumicola levissima and L. atra were isolated from soils collected after forest fires in Crater Lake National Park, United States. Leohumicola incrustata was isolated from burned fynbos from the Cape of Good Hope Nature Reserve, South Africa. The three species exhibit characteristic Leohumicola morphology but are morphologically distinct based on conidial characters. Two DNA barcode regions, the Internal Transcribed Spacer (ITS) nuclear rDNA region and the cytochrome oxidase subunit I (Cox1) mitochondrial gene, were sequenced. Single-gene parsimony, dual-gene parsimony and dual-gene Bayesian inference phylogenetic analyses support L. levissima, L. atra, L. incrustata as distinct phylogenetic species. Both ITS and Cox1 barcodes are effective for the molecular identification of Leohumicola species. Nationaal Herbarium Nederland & Centraallbureau voor Schimmelcultures 2008-08-27 2008-12 /pmc/articles/PMC2846127/ /pubmed/20396577 http://dx.doi.org/10.3767/003158508X361334 Text en © 2008 Nationaal Herbarium Nederland & Centraalbureau voor Schimmelcultures http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. (http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode) Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. |
spellingShingle | Research Article Nguyen, H.D.T. Seifert, K.A. Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States |
title | Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States |
title_full | Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States |
title_fullStr | Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States |
title_full_unstemmed | Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States |
title_short | Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States |
title_sort | description and dna barcoding of three new species of leohumicola from south africa and the united states |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846127/ https://www.ncbi.nlm.nih.gov/pubmed/20396577 http://dx.doi.org/10.3767/003158508X361334 |
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