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Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers

BACKGROUND: This article describes the data mining analysis of a clinical exposure study of 3585 adult smokers and 1077 nonsmokers. The analysis focused on developing models for four biomarkers of potential harm (BOPH): white blood cell count (WBC), 24 h urine 8-epi-prostaglandin F(2α )(EPI8), 24 h...

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Autores principales: Warner, John H, Liang, Qiwei, Sarkar, Mohamadi, Mendes, Paul E, Roethig, Hans J
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846953/
https://www.ncbi.nlm.nih.gov/pubmed/20233412
http://dx.doi.org/10.1186/1471-2288-10-19
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author Warner, John H
Liang, Qiwei
Sarkar, Mohamadi
Mendes, Paul E
Roethig, Hans J
author_facet Warner, John H
Liang, Qiwei
Sarkar, Mohamadi
Mendes, Paul E
Roethig, Hans J
author_sort Warner, John H
collection PubMed
description BACKGROUND: This article describes the data mining analysis of a clinical exposure study of 3585 adult smokers and 1077 nonsmokers. The analysis focused on developing models for four biomarkers of potential harm (BOPH): white blood cell count (WBC), 24 h urine 8-epi-prostaglandin F(2α )(EPI8), 24 h urine 11-dehydro-thromboxane B(2 )(DEH11), and high-density lipoprotein cholesterol (HDL). METHODS: Random Forest was used for initial variable selection and Multivariate Adaptive Regression Spline was used for developing the final statistical models RESULTS: The analysis resulted in the generation of models that predict each of the BOPH as function of selected variables from the smokers and nonsmokers. The statistically significant variables in the models were: platelet count, hemoglobin, C-reactive protein, triglycerides, race and biomarkers of exposure to cigarette smoke for WBC (R-squared = 0.29); creatinine clearance, liver enzymes, weight, vitamin use and biomarkers of exposure for EPI8 (R-squared = 0.41); creatinine clearance, urine creatinine excretion, liver enzymes, use of Non-steroidal antiinflammatory drugs, vitamins and biomarkers of exposure for DEH11 (R-squared = 0.29); and triglycerides, weight, age, sex, alcohol consumption and biomarkers of exposure for HDL (R-squared = 0.39). CONCLUSIONS: Levels of WBC, EPI8, DEH11 and HDL were statistically associated with biomarkers of exposure to cigarette smoking and demographics and life style factors. All of the predictors togather explain 29%-41% of the variability in the BOPH.
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spelling pubmed-28469532010-03-30 Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers Warner, John H Liang, Qiwei Sarkar, Mohamadi Mendes, Paul E Roethig, Hans J BMC Med Res Methodol Research Article BACKGROUND: This article describes the data mining analysis of a clinical exposure study of 3585 adult smokers and 1077 nonsmokers. The analysis focused on developing models for four biomarkers of potential harm (BOPH): white blood cell count (WBC), 24 h urine 8-epi-prostaglandin F(2α )(EPI8), 24 h urine 11-dehydro-thromboxane B(2 )(DEH11), and high-density lipoprotein cholesterol (HDL). METHODS: Random Forest was used for initial variable selection and Multivariate Adaptive Regression Spline was used for developing the final statistical models RESULTS: The analysis resulted in the generation of models that predict each of the BOPH as function of selected variables from the smokers and nonsmokers. The statistically significant variables in the models were: platelet count, hemoglobin, C-reactive protein, triglycerides, race and biomarkers of exposure to cigarette smoke for WBC (R-squared = 0.29); creatinine clearance, liver enzymes, weight, vitamin use and biomarkers of exposure for EPI8 (R-squared = 0.41); creatinine clearance, urine creatinine excretion, liver enzymes, use of Non-steroidal antiinflammatory drugs, vitamins and biomarkers of exposure for DEH11 (R-squared = 0.29); and triglycerides, weight, age, sex, alcohol consumption and biomarkers of exposure for HDL (R-squared = 0.39). CONCLUSIONS: Levels of WBC, EPI8, DEH11 and HDL were statistically associated with biomarkers of exposure to cigarette smoking and demographics and life style factors. All of the predictors togather explain 29%-41% of the variability in the BOPH. BioMed Central 2010-03-16 /pmc/articles/PMC2846953/ /pubmed/20233412 http://dx.doi.org/10.1186/1471-2288-10-19 Text en Copyright ©2010 Warner et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Warner, John H
Liang, Qiwei
Sarkar, Mohamadi
Mendes, Paul E
Roethig, Hans J
Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers
title Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers
title_full Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers
title_fullStr Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers
title_full_unstemmed Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers
title_short Adaptive regression modeling of biomarkers of potential harm in a population of U.S. adult cigarette smokers and nonsmokers
title_sort adaptive regression modeling of biomarkers of potential harm in a population of u.s. adult cigarette smokers and nonsmokers
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846953/
https://www.ncbi.nlm.nih.gov/pubmed/20233412
http://dx.doi.org/10.1186/1471-2288-10-19
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