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CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we app...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848591/ https://www.ncbi.nlm.nih.gov/pubmed/20376349 http://dx.doi.org/10.1371/journal.pone.0009950 |
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author | Pöppe, Judith Sutcliffe, Patricia Hooper, John N. A. Wörheide, Gert Erpenbeck, Dirk |
author_facet | Pöppe, Judith Sutcliffe, Patricia Hooper, John N. A. Wörheide, Gert Erpenbeck, Dirk |
author_sort | Pöppe, Judith |
collection | PubMed |
description | BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we apply DNA barcoding with the standard CO1-barcoding marker on selected Indo-Pacific specimens of two genera, Ircinia and Psammocinia of the family Irciniidae. We show that the CO1 marker identifies several species new to science, reveals separate radiation patterns of deep-sea Ircinia sponges and indicates dispersal patterns of Psammocinia species. However, some species cannot be unambiguously barcoded by solely this marker due to low evolutionary rates. CONCLUSIONS/SIGNIFICANCE: We support previous suggestions for a combination of the standard CO1 fragment with an additional fragment for sponge DNA barcoding. |
format | Text |
id | pubmed-2848591 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-28485912010-04-07 CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) Pöppe, Judith Sutcliffe, Patricia Hooper, John N. A. Wörheide, Gert Erpenbeck, Dirk PLoS One Research Article BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we apply DNA barcoding with the standard CO1-barcoding marker on selected Indo-Pacific specimens of two genera, Ircinia and Psammocinia of the family Irciniidae. We show that the CO1 marker identifies several species new to science, reveals separate radiation patterns of deep-sea Ircinia sponges and indicates dispersal patterns of Psammocinia species. However, some species cannot be unambiguously barcoded by solely this marker due to low evolutionary rates. CONCLUSIONS/SIGNIFICANCE: We support previous suggestions for a combination of the standard CO1 fragment with an additional fragment for sponge DNA barcoding. Public Library of Science 2010-04-01 /pmc/articles/PMC2848591/ /pubmed/20376349 http://dx.doi.org/10.1371/journal.pone.0009950 Text en Pöppe et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Pöppe, Judith Sutcliffe, Patricia Hooper, John N. A. Wörheide, Gert Erpenbeck, Dirk CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) |
title | CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) |
title_full | CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) |
title_fullStr | CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) |
title_full_unstemmed | CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) |
title_short | CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) |
title_sort | co i barcoding reveals new clades and radiation patterns of indo-pacific sponges of the family irciniidae (demospongiae: dictyoceratida) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848591/ https://www.ncbi.nlm.nih.gov/pubmed/20376349 http://dx.doi.org/10.1371/journal.pone.0009950 |
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