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CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)

BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we app...

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Detalles Bibliográficos
Autores principales: Pöppe, Judith, Sutcliffe, Patricia, Hooper, John N. A., Wörheide, Gert, Erpenbeck, Dirk
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848591/
https://www.ncbi.nlm.nih.gov/pubmed/20376349
http://dx.doi.org/10.1371/journal.pone.0009950
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author Pöppe, Judith
Sutcliffe, Patricia
Hooper, John N. A.
Wörheide, Gert
Erpenbeck, Dirk
author_facet Pöppe, Judith
Sutcliffe, Patricia
Hooper, John N. A.
Wörheide, Gert
Erpenbeck, Dirk
author_sort Pöppe, Judith
collection PubMed
description BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we apply DNA barcoding with the standard CO1-barcoding marker on selected Indo-Pacific specimens of two genera, Ircinia and Psammocinia of the family Irciniidae. We show that the CO1 marker identifies several species new to science, reveals separate radiation patterns of deep-sea Ircinia sponges and indicates dispersal patterns of Psammocinia species. However, some species cannot be unambiguously barcoded by solely this marker due to low evolutionary rates. CONCLUSIONS/SIGNIFICANCE: We support previous suggestions for a combination of the standard CO1 fragment with an additional fragment for sponge DNA barcoding.
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spelling pubmed-28485912010-04-07 CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida) Pöppe, Judith Sutcliffe, Patricia Hooper, John N. A. Wörheide, Gert Erpenbeck, Dirk PLoS One Research Article BACKGROUND: DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance. METHODOLOGY/PRINCIPAL FINDINGS: Here we apply DNA barcoding with the standard CO1-barcoding marker on selected Indo-Pacific specimens of two genera, Ircinia and Psammocinia of the family Irciniidae. We show that the CO1 marker identifies several species new to science, reveals separate radiation patterns of deep-sea Ircinia sponges and indicates dispersal patterns of Psammocinia species. However, some species cannot be unambiguously barcoded by solely this marker due to low evolutionary rates. CONCLUSIONS/SIGNIFICANCE: We support previous suggestions for a combination of the standard CO1 fragment with an additional fragment for sponge DNA barcoding. Public Library of Science 2010-04-01 /pmc/articles/PMC2848591/ /pubmed/20376349 http://dx.doi.org/10.1371/journal.pone.0009950 Text en Pöppe et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Pöppe, Judith
Sutcliffe, Patricia
Hooper, John N. A.
Wörheide, Gert
Erpenbeck, Dirk
CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
title CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
title_full CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
title_fullStr CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
title_full_unstemmed CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
title_short CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
title_sort co i barcoding reveals new clades and radiation patterns of indo-pacific sponges of the family irciniidae (demospongiae: dictyoceratida)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848591/
https://www.ncbi.nlm.nih.gov/pubmed/20376349
http://dx.doi.org/10.1371/journal.pone.0009950
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