Cargando…

Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation

BACKGROUND: High-throughput custom designed genotyping arrays are a valuable resource for biologically focused research studies and increasingly for validation of variation predicted by next-generation sequencing (NGS) technologies. We investigate the Illumina GoldenGate chemistry using custom desig...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tindall, Elizabeth A, Petersen, Desiree C, Nikolaysen, Stina, Miller, Webb, Schuster, Stephan C, Hayes, Vanessa M
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Short Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848685/ https://www.ncbi.nlm.nih.gov/pubmed/20175893 http://dx.doi.org/10.1186/1756-0500-3-39

Ejemplares similares

ACPA: automated cluster plot analysis of genotype data
por: Schillert, Arne, et al.
Publicado: (2009)

Inflammatory Genetic Markers of Prostate Cancer Risk
por: Tindall, Elizabeth A., et al.
Publicado: (2010)

Population Genetic Analysis of Plasmodium falciparum Parasites Using a Customized Illumina GoldenGate Genotyping Assay
por: Campino, Susana, et al.
Publicado: (2011)

Next Generation Quality: Assessing the Physician in Clinical History Completeness and Diagnostic Interpretations Using Funnel Plots and Normalized Deviations Plots in 3,854 Prostate Biopsies
por: Bonert, Michael, et al.
Publicado: (2017)

High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology
por: Nag, Sidsel, et al.
Publicado: (2017)

Quantifying the risk of error when interpreting funnel plots
por: Simmonds, Mark
Publicado: (2015)

Interpretation of Mott–Schottky plots of photoanodes for water splitting
por: Ravishankar, Sandheep, et al.
Publicado: (2022)

nextPARS: parallel probing of RNA structures in Illumina
por: Saus, Ester, et al.
Publicado: (2018)

argyle: An R Package for Analysis of Illumina Genotyping Arrays
por: Morgan, Andrew P.
Publicado: (2015)

Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME
por: Lindenbaum, Pierre, et al.
Publicado: (2011)

XYLab: an interactive plotting tool for mixed multivariate data observation and interpretation
por: Ramazzotti, Matteo, et al.
Publicado: (2008)

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots
por: Lawson, Daniel J., et al.
Publicado: (2018)

Seeing the Forest by Looking at the Trees: How to Interpret a Meta-Analysis Forest Plot
por: Dettori, Joseph R., et al.
Publicado: (2021)

Customer Success Management: The next evolution in customer management practice?()
por: Hilton, Bryson, et al.
Publicado: (2020)

Evaluation of a custom QIAseq targeted DNA panel with 164 ancestry informative markers sequenced with the Illumina MiSeq
por: Truelsen, D., et al.
Publicado: (2021)

Clustering Scatter Plots Using Data Depth Measures
por: Zhang, Zhanpan, et al.
Publicado: (2011)

Summary plot for the interpretation of heavy Higgs boson searches in the Georgi-Machacek model
por: The ATLAS collaboration
Publicado: (2022)

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
por: Oyola, Samuel O, et al.
Publicado: (2012)

Software for pre-processing Illumina next-generation sequencing short read sequences
por: Chen, Chuming, et al.
Publicado: (2014)

Illumina next generation sequencing data and expression microarrays data from retinoblastoma and medulloblastoma tissues
por: García-Chequer, A.J., et al.
Publicado: (2016)

Clover: a clustering-oriented de novo assembler for Illumina sequences
por: Hsieh, Ming-Feng, et al.
Publicado: (2020)

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data
por: Barbosa-Morais, Nuno L., et al.
Publicado: (2010)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
por: LaBarre, Brenna A., et al.
Publicado: (2019)

Next generation mapping reveals novel large genomic rearrangements in prostate cancer
por: Jaratlerdsiri, Weerachai, et al.
Publicado: (2017)

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes
por: Seguin-Orlando, Andaine, et al.
Publicado: (2013)

The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing
por: Groenenberg, Dick SJ, et al.
Publicado: (2012)

Illumina Next Generation Sequencing for the Analysis of Eimeria Populations in Commercial Broilers and Indigenous Chickens
por: Hinsu, Ankit T., et al.
Publicado: (2018)

Metagenomic data of fungal community in Kongsfjorden, Arctic using Illumina next generation sequencing
por: Kabeer, Farha Arakkaveettil, et al.
Publicado: (2018)

Illumina next-generation sequencing reveals the mitochondrial genome of Ducetia japonica (Orthoptera: Tettigoniidae)
por: Guan, Bei, et al.
Publicado: (2016)

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
por: Ritchie, Matthew E., et al.
Publicado: (2009)

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
por: Akhunov, Eduard, et al.
Publicado: (2009)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data
por: Liu, Qi, et al.
Publicado: (2012)

Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays
por: Seiser, Eric L, et al.
Publicado: (2015)

Plot Locator: An app for locating plots in the field
por: Boudell, Jere A., et al.
Publicado: (2019)

Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom Arrays
por: Smith, Edward M., et al.
Publicado: (2007)

Calling SNPs without a reference sequence
por: Ratan, Aakrosh, et al.
Publicado: (2010)

Brick plots: an intuitive platform for visualizing multiparametric immunophenotyped cell clusters
por: Norton, Samuel E., et al.
Publicado: (2020)

BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results
por: Herrera-Galeano, Jesus Enrique, et al.
Publicado: (2014)

“Gap hunting” to characterize clustered probe signals in Illumina methylation array data
por: Andrews, Shan V., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_qattbqkbjo4fssf9h26l6pdhlk