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Recent developments in classical density modification

Classical density-modification techniques (as opposed to statistical approaches) offer a computationally cheap method for improving phase estimates in order to provide a good electron-density map for model building. The rise of statistical methods has lead to a shift in focus away from the classical...

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Detalles Bibliográficos
Autor principal: Cowtan, Kevin
Formato: Texto
Lenguaje:English
Publicado: International Union of Crystallography 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2852311/
https://www.ncbi.nlm.nih.gov/pubmed/20383000
http://dx.doi.org/10.1107/S090744490903947X
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author Cowtan, Kevin
author_facet Cowtan, Kevin
author_sort Cowtan, Kevin
collection PubMed
description Classical density-modification techniques (as opposed to statistical approaches) offer a computationally cheap method for improving phase estimates in order to provide a good electron-density map for model building. The rise of statistical methods has lead to a shift in focus away from the classical approaches; as a result, some recent developments have not made their way into classical density-modification software. This paper describes the application of some recent tech­niques, including most importantly the use of prior phase information in the likelihood estimation of phase errors within a classical density-modification framework. The resulting software gives significantly better results than comparable classical methods, while remaining nearly two orders of magnitude faster than statistical methods.
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spelling pubmed-28523112010-04-13 Recent developments in classical density modification Cowtan, Kevin Acta Crystallogr D Biol Crystallogr Research Papers Classical density-modification techniques (as opposed to statistical approaches) offer a computationally cheap method for improving phase estimates in order to provide a good electron-density map for model building. The rise of statistical methods has lead to a shift in focus away from the classical approaches; as a result, some recent developments have not made their way into classical density-modification software. This paper describes the application of some recent tech­niques, including most importantly the use of prior phase information in the likelihood estimation of phase errors within a classical density-modification framework. The resulting software gives significantly better results than comparable classical methods, while remaining nearly two orders of magnitude faster than statistical methods. International Union of Crystallography 2010-04-01 2010-03-24 /pmc/articles/PMC2852311/ /pubmed/20383000 http://dx.doi.org/10.1107/S090744490903947X Text en © Cowtan 2010 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Cowtan, Kevin
Recent developments in classical density modification
title Recent developments in classical density modification
title_full Recent developments in classical density modification
title_fullStr Recent developments in classical density modification
title_full_unstemmed Recent developments in classical density modification
title_short Recent developments in classical density modification
title_sort recent developments in classical density modification
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2852311/
https://www.ncbi.nlm.nih.gov/pubmed/20383000
http://dx.doi.org/10.1107/S090744490903947X
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