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Recent developments in classical density modification
Classical density-modification techniques (as opposed to statistical approaches) offer a computationally cheap method for improving phase estimates in order to provide a good electron-density map for model building. The rise of statistical methods has lead to a shift in focus away from the classical...
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2852311/ https://www.ncbi.nlm.nih.gov/pubmed/20383000 http://dx.doi.org/10.1107/S090744490903947X |
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author | Cowtan, Kevin |
author_facet | Cowtan, Kevin |
author_sort | Cowtan, Kevin |
collection | PubMed |
description | Classical density-modification techniques (as opposed to statistical approaches) offer a computationally cheap method for improving phase estimates in order to provide a good electron-density map for model building. The rise of statistical methods has lead to a shift in focus away from the classical approaches; as a result, some recent developments have not made their way into classical density-modification software. This paper describes the application of some recent techniques, including most importantly the use of prior phase information in the likelihood estimation of phase errors within a classical density-modification framework. The resulting software gives significantly better results than comparable classical methods, while remaining nearly two orders of magnitude faster than statistical methods. |
format | Text |
id | pubmed-2852311 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-28523112010-04-13 Recent developments in classical density modification Cowtan, Kevin Acta Crystallogr D Biol Crystallogr Research Papers Classical density-modification techniques (as opposed to statistical approaches) offer a computationally cheap method for improving phase estimates in order to provide a good electron-density map for model building. The rise of statistical methods has lead to a shift in focus away from the classical approaches; as a result, some recent developments have not made their way into classical density-modification software. This paper describes the application of some recent techniques, including most importantly the use of prior phase information in the likelihood estimation of phase errors within a classical density-modification framework. The resulting software gives significantly better results than comparable classical methods, while remaining nearly two orders of magnitude faster than statistical methods. International Union of Crystallography 2010-04-01 2010-03-24 /pmc/articles/PMC2852311/ /pubmed/20383000 http://dx.doi.org/10.1107/S090744490903947X Text en © Cowtan 2010 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Cowtan, Kevin Recent developments in classical density modification |
title | Recent developments in classical density modification |
title_full | Recent developments in classical density modification |
title_fullStr | Recent developments in classical density modification |
title_full_unstemmed | Recent developments in classical density modification |
title_short | Recent developments in classical density modification |
title_sort | recent developments in classical density modification |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2852311/ https://www.ncbi.nlm.nih.gov/pubmed/20383000 http://dx.doi.org/10.1107/S090744490903947X |
work_keys_str_mv | AT cowtankevin recentdevelopmentsinclassicaldensitymodification |