Cargando…

Estimating the proportion of microarray probes expressed in an RNA sample

A fundamental question in microarray analysis is the estimation of the number of expressed probes in different RNA samples. Negative control probes available in the latest microarray platforms, such as Illumina whole genome expression BeadChips, provide a unique opportunity to estimate the number of...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shi, Wei, de Graaf, Carolyn A., Kinkel, Sarah A., Achtman, Ariel H., Baldwin, Tracey, Schofield, Louis, Scott, Hamish S., Hilton, Douglas J., Smyth, Gordon K.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2010
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853118/ https://www.ncbi.nlm.nih.gov/pubmed/20056656 http://dx.doi.org/10.1093/nar/gkp1204

Ejemplares similares

Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes
por: Oshlack, Alicia, et al.
Publicado: (2007)

Estimating the proportion of true null hypotheses, with application to DNA microarray data
por: Ferkingstad, E, et al.
Publicado: (2003)

Microarray background correction: maximum likelihood estimation for the normal–exponential convolution
por: Silver, Jeremy D., et al.
Publicado: (2009)

Power and sample size estimation in microarray studies
por: Lin, Wei-Jiun, et al.
Publicado: (2010)

Estimation of Sensitive Proportion by Randomized Response Data in Successive Sampling
por: Yu, Bo, et al.
Publicado: (2015)

The use of miRNA microarrays for the analysis of cancer samples with global miRNA decrease
por: Wu, Di, et al.
Publicado: (2013)

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability
por: Uziela, Karolis, et al.
Publicado: (2015)

Microarrays for identifying binding sites and probing structure of RNAs
por: Kierzek, Ryszard, et al.
Publicado: (2015)

Estimation of finite population mean using double sampling under probability proportional to size sampling in the presence of extreme values
por: Wang, Jing, et al.
Publicado: (2023)

Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples
por: Pipes, Lenore, et al.
Publicado: (2022)

VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
por: Kestler, Hans A, et al.
Publicado: (2008)

High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays
por: Wang, Yuker, et al.
Publicado: (2009)

A strategy for oligonucleotide microarray probe reduction
por: Antipova, Alena A, et al.
Publicado: (2002)

A mixture model approach to sample size estimation in two-sample comparative microarray experiments
por: Jørstad, Tommy S, et al.
Publicado: (2008)

Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
por: Li, Xingyuan, et al.
Publicado: (2005)

Transcriptional profiling of eosinophil subsets in interleukin‐5 transgenic mice
por: Fairfax, Kirsten A., et al.
Publicado: (2018)

Sensitive proportion in ranked set sampling
por: Abbasi, Azhar Mehmood, et al.
Publicado: (2021)

Estimating ancestral proportions in a multi-ethnic US sample: implications for studies of admixed populations
por: Levran, Orna, et al.
Publicado: (2012)

Spatial statistical tools for genome-wide mutation cluster detection under a microarray probe sampling system
por: Luo, Bin, et al.
Publicado: (2018)

Improving interval estimation of binomial proportions
por: Zhou, X.H., et al.
Publicado: (2008)

rePROBE: Workflow for Revised Probe Assignment and Updated Probe-set Annotation in Microarrays
por: Hadlich, Frieder, et al.
Publicado: (2021)

Separate-channel analysis of two-channel microarrays: recovering inter-spot information
por: Smyth, Gordon K, et al.
Publicado: (2013)

Empirical Bayes models for multiple probe type microarrays at the probe level
por: Åstrand, Magnus, et al.
Publicado: (2008)

A robust method for estimating gene expression states using Affymetrix microarray probe level data
por: Ohtaki, Megu, et al.
Publicado: (2010)

Detection and correction of probe-level artefacts on microarrays
por: Petri, Tobias, et al.
Publicado: (2012)

Probing Biology with Small Molecule Microarrays (SMM)
por: Winssinger, Nicolas, et al.
Publicado: (2007)

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples
por: Gafurov, Askar, et al.
Publicado: (2022)

Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses
por: Wang, Zheng, et al.
Publicado: (2008)

Spectral estimation in unevenly sampled space of periodically expressed microarray time series data
por: Liew, Alan Wee-Chung, et al.
Publicado: (2007)

Estimating Genetic Ancestry Proportions from Faces
por: Klimentidis, Yann C., et al.
Publicado: (2009)

Estimate of the sequenced proportion of the global prokaryotic genome
por: Zhang, Zheng, et al.
Publicado: (2020)

The microarray manual curation tool (MMCT): A Web server for microarray probe evaluations
por: Tulpan, Dan, et al.
Publicado: (2010)

Incorporating sampling weights into robust estimation of Cox proportional hazards regression model, with illustration in the Multi-Ethnic Study of Atherosclerosis
por: Sitlani, Colleen M., et al.
Publicado: (2020)

Battle of epigenetic proportions: comparing Illumina’s EPIC methylation microarrays and TruSeq targeted bisulfite sequencing
por: Heiss, Jonathan A., et al.
Publicado: (2019)

Microarray Probe Expression Measures, Data Normalization and Statistical Validation
por: Saviozzi, Silvia, et al.
Publicado: (2003)

In silico microarray probe design for diagnosis of multiple pathogens
por: Vijaya Satya, Ravi, et al.
Publicado: (2008)

Design and analysis of mismatch probes for long oligonucleotide microarrays
por: Deng, Ye, et al.
Publicado: (2008)

Analysis of probe level patterns in Affymetrix microarray data
por: Cambon, Alexander C, et al.
Publicado: (2007)

Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays
por: Mulle, Jennifer G., et al.
Publicado: (2010)

Evaluating oligonucleotide properties for DNA microarray probe design
por: Xia, Xiao-Qin, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_8j62gqombpftrti5h3rlqbfd91