Cargando…

The eNMR platform for structural biology

The e-NMR project is a European cooperation initiative that aims at providing the bio-NMR user community with a software platform integrating and streamlining the computational approaches necessary for the analysis of bio-NMR data. The e-NMR platform is based on a Grid computational infrastructure....

Descripción completa

Detalles Bibliográficos
Autores principales: Bonvin, Alexandre M. J. J., Rosato, Antonio, Wassenaar, Tsjerk A.
Formato: Texto
Lenguaje:English
Publicado: Springer Netherlands 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2855812/
https://www.ncbi.nlm.nih.gov/pubmed/20229048
http://dx.doi.org/10.1007/s10969-010-9084-9
_version_ 1782180212780302336
author Bonvin, Alexandre M. J. J.
Rosato, Antonio
Wassenaar, Tsjerk A.
author_facet Bonvin, Alexandre M. J. J.
Rosato, Antonio
Wassenaar, Tsjerk A.
author_sort Bonvin, Alexandre M. J. J.
collection PubMed
description The e-NMR project is a European cooperation initiative that aims at providing the bio-NMR user community with a software platform integrating and streamlining the computational approaches necessary for the analysis of bio-NMR data. The e-NMR platform is based on a Grid computational infrastructure. A main focus of the current implementation of the e-NMR platform is on streamlining structure determination protocols. Indeed, to facilitate the use of NMR spectroscopy in the life sciences, the eNMR consortium has set out to provide protocolized services through easy-to-use web interfaces, while still retaining sufficient flexibility to handle specific requests by expert users. Various programs relevant for structural biology applications are already available through the e-NMR portal, including HADDOCK, XPLOR-NIH, CYANA and csRosetta. The implementation of these services, and in particular the distribution of calculations to the GRID infrastructure, has required the development of specific tools. However, the GRID infrastructure is maintained completely transparent to the users. With more than 150 registered users, eNMR is currently the second largest European Virtual Organization in the life sciences.
format Text
id pubmed-2855812
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-28558122010-04-25 The eNMR platform for structural biology Bonvin, Alexandre M. J. J. Rosato, Antonio Wassenaar, Tsjerk A. J Struct Funct Genomics Article The e-NMR project is a European cooperation initiative that aims at providing the bio-NMR user community with a software platform integrating and streamlining the computational approaches necessary for the analysis of bio-NMR data. The e-NMR platform is based on a Grid computational infrastructure. A main focus of the current implementation of the e-NMR platform is on streamlining structure determination protocols. Indeed, to facilitate the use of NMR spectroscopy in the life sciences, the eNMR consortium has set out to provide protocolized services through easy-to-use web interfaces, while still retaining sufficient flexibility to handle specific requests by expert users. Various programs relevant for structural biology applications are already available through the e-NMR portal, including HADDOCK, XPLOR-NIH, CYANA and csRosetta. The implementation of these services, and in particular the distribution of calculations to the GRID infrastructure, has required the development of specific tools. However, the GRID infrastructure is maintained completely transparent to the users. With more than 150 registered users, eNMR is currently the second largest European Virtual Organization in the life sciences. Springer Netherlands 2010-03-13 2010 /pmc/articles/PMC2855812/ /pubmed/20229048 http://dx.doi.org/10.1007/s10969-010-9084-9 Text en © The Author(s) 2010 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Article
Bonvin, Alexandre M. J. J.
Rosato, Antonio
Wassenaar, Tsjerk A.
The eNMR platform for structural biology
title The eNMR platform for structural biology
title_full The eNMR platform for structural biology
title_fullStr The eNMR platform for structural biology
title_full_unstemmed The eNMR platform for structural biology
title_short The eNMR platform for structural biology
title_sort enmr platform for structural biology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2855812/
https://www.ncbi.nlm.nih.gov/pubmed/20229048
http://dx.doi.org/10.1007/s10969-010-9084-9
work_keys_str_mv AT bonvinalexandremjj theenmrplatformforstructuralbiology
AT rosatoantonio theenmrplatformforstructuralbiology
AT wassenaartsjerka theenmrplatformforstructuralbiology
AT bonvinalexandremjj enmrplatformforstructuralbiology
AT rosatoantonio enmrplatformforstructuralbiology
AT wassenaartsjerka enmrplatformforstructuralbiology