Cargando…

Reconstruction of Gene Regulatory Modules in Cancer Cell Cycle by Multi-Source Data Integration

BACKGROUND: Precise regulation of the cell cycle is crucial to the growth and development of all organisms. Understanding the regulatory mechanism of the cell cycle is crucial to unraveling many complicated diseases, most notably cancer. Multiple sources of biological data are available to study the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G., Clarke, Robert, Ressom, Habtom W.
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858157/ https://www.ncbi.nlm.nih.gov/pubmed/20422009 http://dx.doi.org/10.1371/journal.pone.0010268

Ejemplares similares

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
por: Zhang, Yuji, et al.
Publicado: (2008)

Reverse engineering module networks by PSO-RNN hybrid modeling
por: Zhang, Yuji, et al.
Publicado: (2009)

MOTA: Network-Based Multi-Omic Data Integration for Biomarker Discovery
por: Fan, Ziling, et al.
Publicado: (2020)

An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice
por: Cheng, Chen, et al.
Publicado: (2007)

A new method for alignment of LC-MALDI-TOF data
por: Tang, Zhiqun, et al.
Publicado: (2011)

BICORN: An R package for integrative inference of de novo cis-regulatory modules
por: Chen, Xi, et al.
Publicado: (2020)

SIMAT: GC-SIM-MS data analysis tool
por: Nezami Ranjbar, Mohammad R., et al.
Publicado: (2015)

MetaboSearch: Tool for Mass-Based Metabolite Identification Using Multiple Databases
por: Zhou, Bin, et al.
Publicado: (2012)

Author Correction: BICORN: An R package for integrative inference of de novo cis-regulatory modules
por: Chen, Xi, et al.
Publicado: (2020)

Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining
por: de los Reyes, Benildo G, et al.
Publicado: (2015)

Serotonin induced hepatic steatosis is associated with modulation of autophagy and notch signaling pathway
por: Niture, Suryakant, et al.
Publicado: (2018)

Proteomic analysis of novel targets associated with TrkA-mediated tyrosine phosphorylation signaling pathways in SK-N-MC neuroblastoma cells
por: Wu, Fang-Xiang, et al.
Publicado: (2013)

Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
por: Wu, Wei-Sheng, et al.
Publicado: (2006)

Gaussian process regression model for normalization of LC-MS data using scan-level information
por: Nezami Ranjbar, Mohammad R, et al.
Publicado: (2013)

Retinoic Acid Mediates Regulation of Network Formation by COUP-TFII and VE-Cadherin Expression by TGFβ Receptor Kinase in Breast Cancer Cells
por: Prahalad, Priya, et al.
Publicado: (2010)

Using a spike-in experiment to evaluate analysis of LC-MS data
por: Tuli, Leepika, et al.
Publicado: (2012)

Topic model-based mass spectrometric data analysis in cancer biomarker discovery studies
por: Wang, Minkun, et al.
Publicado: (2016)

Biomarker Discovery for Hepatocellular Carcinoma in Patients with Liver Cirrhosis Using Untargeted Metabolomics and Lipidomics Studies
por: Rashid, Md Mamunur, et al.
Publicado: (2023)

Motif-guided sparse decomposition of gene expression data for regulatory module identification
por: Gong, Ting, et al.
Publicado: (2011)

Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence
por: Mohanty, Bijayalaxmi, et al.
Publicado: (2016)

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO
por: Zuo, Yiming, et al.
Publicado: (2017)

(13)C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses
por: Azizan, Kamalrul Azlan, et al.
Publicado: (2017)

Integrating many co-splicing networks to reconstruct splicing regulatory modules
por: Dai, Chao, et al.
Publicado: (2012)

Ion annotation-assisted analysis of LC-MS based metabolomic experiment
por: Varghese, Rency S, et al.
Publicado: (2012)

Identification of Regulatory Modules That Stratify Lupus Disease Mechanism through Integrating Multi-Omics Data
por: Wang, Ting-You, et al.
Publicado: (2019)

ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements
por: Chen, Xi, et al.
Publicado: (2021)

Cis-regulatory signatures of orthologous stress-associated bZIP transcription factors from rice, sorghum and Arabidopsis based on phylogenetic footprints
por: Xu, Fuyu, et al.
Publicado: (2012)

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks
por: Shi, Xu, et al.
Publicado: (2013)

Pathway and Network Approaches for Identification of Cancer Signature Markers from Omics Data
por: Wang, Jinlian, et al.
Publicado: (2015)

DNA Methylation Activates TP73 Expression in Hepatocellular Carcinoma and Gastrointestinal Cancer
por: Yao, Zhixing, et al.
Publicado: (2019)

Convolutional Neural Network-Based Compound Fingerprint Prediction for Metabolite Annotation
por: Gao, Shijinqiu, et al.
Publicado: (2022)

Investigation on SMT Product Defect Recognition Based on Multi-Source and Multi-Dimensional Data Reconstruction
por: Chang, Jiantao, et al.
Publicado: (2022)

A novel multi-module integrated intrusion detection system for high-dimensional imbalanced data
por: Cui, Jiyuan, et al.
Publicado: (2022)

Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data
por: Yip, Kevin Y., et al.
Publicado: (2010)

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data
por: Li, Wenyuan, et al.
Publicado: (2012)

Thermal Optimization of a Dual Pressure Goswami Cycle for Low Grade Thermal Sources
por: Guzmán, Gustavo, et al.
Publicado: (2019)

Characterizing the evolution life cycle of the Sunkoshi landslide in Nepal with multi-source SAR data
por: Ao, Meng, et al.
Publicado: (2020)

Integrative Analysis of DNA Methylation and microRNA Expression Reveals Mechanisms of Racial Heterogeneity in Hepatocellular Carcinoma
por: Varghese, Rency S., et al.
Publicado: (2021)

Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
por: Kim, Daniel, et al.
Publicado: (2023)

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress
por: Yun, Kil-Young, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_mrvncuk01kalg13cp7c6ofegg2