PanCGHweb: a web tool for genotype calling in pangenome CGH data

Summary: A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genot...

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Detalles Bibliográficos
Autores principales: Bayjanov, Jumamurat R., Siezen, Roland J., van Hijum, Sacha A. F. T.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859125/
https://www.ncbi.nlm.nih.gov/pubmed/20219865
http://dx.doi.org/10.1093/bioinformatics/btq103
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author Bayjanov, Jumamurat R.
Siezen, Roland J.
van Hijum, Sacha A. F. T.
author_facet Bayjanov, Jumamurat R.
Siezen, Roland J.
van Hijum, Sacha A. F. T.
author_sort Bayjanov, Jumamurat R.
collection PubMed
description Summary: A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data. Availability: PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/ Contact: sacha.vanhijum@nizo.nl
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spelling pubmed-28591252010-04-26 PanCGHweb: a web tool for genotype calling in pangenome CGH data Bayjanov, Jumamurat R. Siezen, Roland J. van Hijum, Sacha A. F. T. Bioinformatics Applications Note Summary: A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data. Availability: PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/ Contact: sacha.vanhijum@nizo.nl Oxford University Press 2010-05-01 2010-03-10 /pmc/articles/PMC2859125/ /pubmed/20219865 http://dx.doi.org/10.1093/bioinformatics/btq103 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Bayjanov, Jumamurat R.
Siezen, Roland J.
van Hijum, Sacha A. F. T.
PanCGHweb: a web tool for genotype calling in pangenome CGH data
title PanCGHweb: a web tool for genotype calling in pangenome CGH data
title_full PanCGHweb: a web tool for genotype calling in pangenome CGH data
title_fullStr PanCGHweb: a web tool for genotype calling in pangenome CGH data
title_full_unstemmed PanCGHweb: a web tool for genotype calling in pangenome CGH data
title_short PanCGHweb: a web tool for genotype calling in pangenome CGH data
title_sort pancghweb: a web tool for genotype calling in pangenome cgh data
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859125/
https://www.ncbi.nlm.nih.gov/pubmed/20219865
http://dx.doi.org/10.1093/bioinformatics/btq103
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AT siezenrolandj pancghwebawebtoolforgenotypecallinginpangenomecghdata
AT vanhijumsachaaft pancghwebawebtoolforgenotypecallinginpangenomecghdata

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