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EuGène-maize: a web site for maize gene prediction

Motivation:A large part of the maize B73 genome sequence is now available and emerging sequencing technologies will offer cheap and easy ways to sequence areas of interest from many other maize genotypes. One of the steps required to turn these sequences into valuable information is gene content pre...

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Detalles Bibliográficos
Autores principales: Montalent, Pierre, Joets, Johann
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859131/
https://www.ncbi.nlm.nih.gov/pubmed/20400755
http://dx.doi.org/10.1093/bioinformatics/btq123
Descripción
Sumario:Motivation:A large part of the maize B73 genome sequence is now available and emerging sequencing technologies will offer cheap and easy ways to sequence areas of interest from many other maize genotypes. One of the steps required to turn these sequences into valuable information is gene content prediction. To date, there is no publicly available gene predictor specifically trained for maize sequences. To this end, we have chosen to train the EuGène software that can combine several sources of evidence into a consolidated gene model prediction. Availability: http://genome.jouy.inra.fr/eugene/cgi-bin/eugene_form.pl Contact: joets@moulon.inra.fr Supplementary information:Supplementary data are available at Bioinformatics online.