Cargando…

Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates

BACKGROUND: Recent developments of high-density SNP chips across a number of species require accurate genetic maps. Despite rapid advances in genome sequence assembly and availability of a number of tools for creating genetic maps, the exact genome location for a number of SNPs from these SNP chips...

Descripción completa

Detalles Bibliográficos
Autores principales:	Khatkar, Mehar S, Hobbs, Matthew, Neuditschko, Markus, Sölkner, Johann, Nicholas, Frank W, Raadsma, Herman W
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859757/ https://www.ncbi.nlm.nih.gov/pubmed/20370931 http://dx.doi.org/10.1186/1471-2105-11-171

Ejemplares similares

Linkage disequilibrium on chromosome 6 in Australian Holstein-Friesian cattle
por: Khatkar, Mehar S, et al.
Publicado: (2006)

NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation
por: Neuditschko, Markus, et al.
Publicado: (2012)

A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei
por: Jones, David B., et al.
Publicado: (2017)

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel
por: Khatkar, Mehar S, et al.
Publicado: (2008)

Performance of random forest when SNPs are in linkage disequilibrium
por: Meng, Yan A, et al.
Publicado: (2009)

SNPs, linkage disequilibrium, and chronic mountain sickness in Tibetan Chinese
por: Buroker, Norman E, et al.
Publicado: (2017)

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection
por: Jones, David B, et al.
Publicado: (2013)

A linkage disequilibrium-based approach to position unmapped SNPs in crop species
por: Yadav, Seema, et al.
Publicado: (2021)

Different evolutionary patterns of SNPs between domains and unassigned regions in human protein-coding sequences
por: Pang, Erli, et al.
Publicado: (2016)

Characterization of the linkage disequilibrium structure and identification of tagging-SNPs in five DNA repair genes
por: Allen-Brady, Kristina, et al.
Publicado: (2005)

LD(2)SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs
por: Chang, Hsueh-Wei, et al.
Publicado: (2009)

Handling linkage disequilibrium in qualitative trait linkage analysis using dense SNPs: a two-step strategy
por: Cho, Kelly, et al.
Publicado: (2009)

Quantitative trait loci mapping in dairy cattle: review and meta-analysis
por: Khatkar, Mehar S, et al.
Publicado: (2004)

Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers
por: Moser, Gerhard, et al.
Publicado: (2010)

Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle
por: Khatkar, Mehar S, et al.
Publicado: (2012)

Assortative Mating and Linkage Disequilibrium
por: Hedrick, Philip W.
Publicado: (2016)

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium
por: Bush, William S, et al.
Publicado: (2009)

Comparison of linkage disequilibrium levels in Iranian indigenous cattle using whole genome SNPs data
por: Karimi, Karim, et al.
Publicado: (2015)

Composite Selection Signals for Complex Traits Exemplified Through Bovine Stature Using Multibreed Cohorts of European and African Bos taurus
por: Randhawa, Imtiaz A. S., et al.
Publicado: (2015)

A Meta-Assembly of Selection Signatures in Cattle
por: Randhawa, Imtiaz A. S., et al.
Publicado: (2016)

Genetic analysis of digital image derived morphometric traits of black tiger shrimp (Penaeus monodon) by incorporating G × E investigations
por: Hasan, Md. Mehedi, et al.
Publicado: (2022)

Confounding by linkage disequilibrium
por: Aissani, Brahim
Publicado: (2014)

Linkage Disequilibrium in Wild Mice
por: Laurie, Cathy C, et al.
Publicado: (2007)

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle
por: Pérez O’Brien, Ana M, et al.
Publicado: (2014)

A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers
por: Moser, Gerhard, et al.
Publicado: (2009)

Allele Frequency Matching Between SNPs Reveals an Excess of Linkage Disequilibrium in Genic Regions of the Human Genome
por: Eberle, Michael A, et al.
Publicado: (2006)

Linkage disequilibrium blocks, haplotype structure, and htSNPs of human CYP7A1 gene
por: Nakamoto, Kaori, et al.
Publicado: (2006)

A Method to Assess Linkage Disequilibrium between CNVs and SNPs Inside Copy Number Variable Regions
por: Wineinger, Nathan E., et al.
Publicado: (2011)

Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato
por: Robbins, Matthew D., et al.
Publicado: (2011)

Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan
por: Utsunomiya, Adam T. H., et al.
Publicado: (2016)

Identification of key contributors in complex population structures
por: Neuditschko, Markus, et al.
Publicado: (2017)

Volume measures for linkage disequilibrium
por: Chen, Yuguo, et al.
Publicado: (2006)

Bayesian estimates of linkage disequilibrium
por: Sebastiani, Paola, et al.
Publicado: (2007)

Cosmopolitan linkage disequilibrium maps
por: Gibson, Jane, et al.
Publicado: (2005)

Optimal linkage disequilibrium splitting
por: Privé, Florian
Publicado: (2021)

Estimating heritability using family-pooled phenotypic and genotypic data: a simulation study applied to aquaculture
por: Khalilisamani, Nima, et al.
Publicado: (2022)

GLIDERS - A web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs
por: Lawrence, Robert, et al.
Publicado: (2009)

Estimates of linkage disequilibrium and effective population sizes in Chinese Merino (Xinjiang type) sheep by genome-wide SNPs
por: Liu, Shudong, et al.
Publicado: (2017)

Improving the detection of pathways in genome-wide association studies by combined effects of SNPs from Linkage Disequilibrium blocks
por: Zhao, Huiying, et al.
Publicado: (2017)

The effect of linkage disequilibrium on linkage analysis of incomplete pedigrees
por: Levinson, Douglas F, et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_on5u43s8lmkkkm3ffdeil0ido2