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Meeting report: a workshop on Best Practices in Genome Annotation

Efforts to annotate the genomes of a wide variety of model organisms are currently carried out by sequencing centers, model organism databases and academic/institutional laboratories around the world. Different annotation methods and tools have been developed over time to meet the needs of biologist...

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Detalles Bibliográficos
Autores principales: Madupu, Ramana, Brinkac, Lauren M., Harrow, Jennifer, Wilming, Laurens G., Böhme, Ulrike, Lamesch, Philippe, Hannick, Linda I.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860899/
https://www.ncbi.nlm.nih.gov/pubmed/20428316
http://dx.doi.org/10.1093/database/baq001
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author Madupu, Ramana
Brinkac, Lauren M.
Harrow, Jennifer
Wilming, Laurens G.
Böhme, Ulrike
Lamesch, Philippe
Hannick, Linda I.
author_facet Madupu, Ramana
Brinkac, Lauren M.
Harrow, Jennifer
Wilming, Laurens G.
Böhme, Ulrike
Lamesch, Philippe
Hannick, Linda I.
author_sort Madupu, Ramana
collection PubMed
description Efforts to annotate the genomes of a wide variety of model organisms are currently carried out by sequencing centers, model organism databases and academic/institutional laboratories around the world. Different annotation methods and tools have been developed over time to meet the needs of biologists faced with the task of annotating biological data. While standardized methods are essential for consistent curation within each annotation group, methods and tools can differ between groups, especially when the groups are curating different organisms. Biocurators from several institutes met at the Third International Biocuration Conference in Berlin, Germany, April 2009 and hosted the ‘Best Practices in Genome Annotation: Inference from Evidence’ workshop to share their strategies, pipelines, standards and tools. This article documents the material presented in the workshop.
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spelling pubmed-28608992010-04-28 Meeting report: a workshop on Best Practices in Genome Annotation Madupu, Ramana Brinkac, Lauren M. Harrow, Jennifer Wilming, Laurens G. Böhme, Ulrike Lamesch, Philippe Hannick, Linda I. Database (Oxford) Original Article Efforts to annotate the genomes of a wide variety of model organisms are currently carried out by sequencing centers, model organism databases and academic/institutional laboratories around the world. Different annotation methods and tools have been developed over time to meet the needs of biologists faced with the task of annotating biological data. While standardized methods are essential for consistent curation within each annotation group, methods and tools can differ between groups, especially when the groups are curating different organisms. Biocurators from several institutes met at the Third International Biocuration Conference in Berlin, Germany, April 2009 and hosted the ‘Best Practices in Genome Annotation: Inference from Evidence’ workshop to share their strategies, pipelines, standards and tools. This article documents the material presented in the workshop. Oxford University Press 2010 2010-02-18 /pmc/articles/PMC2860899/ /pubmed/20428316 http://dx.doi.org/10.1093/database/baq001 Text en Published by Oxford University Press 2010. http://creativecommons.org/licenses/by-nc/2.5 This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Madupu, Ramana
Brinkac, Lauren M.
Harrow, Jennifer
Wilming, Laurens G.
Böhme, Ulrike
Lamesch, Philippe
Hannick, Linda I.
Meeting report: a workshop on Best Practices in Genome Annotation
title Meeting report: a workshop on Best Practices in Genome Annotation
title_full Meeting report: a workshop on Best Practices in Genome Annotation
title_fullStr Meeting report: a workshop on Best Practices in Genome Annotation
title_full_unstemmed Meeting report: a workshop on Best Practices in Genome Annotation
title_short Meeting report: a workshop on Best Practices in Genome Annotation
title_sort meeting report: a workshop on best practices in genome annotation
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860899/
https://www.ncbi.nlm.nih.gov/pubmed/20428316
http://dx.doi.org/10.1093/database/baq001
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