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A Critical Quantity for Noise Attenuation in Feedback Systems

Feedback modules, which appear ubiquitously in biological regulations, are often subject to disturbances from the input, leading to fluctuations in the output. Thus, the question becomes how a feedback system can produce a faithful response with a noisy input. We employed multiple time scale analysi...

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Detalles Bibliográficos
Autores principales: Wang, Liming, Xin, Jack, Nie, Qing
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861702/
https://www.ncbi.nlm.nih.gov/pubmed/20442870
http://dx.doi.org/10.1371/journal.pcbi.1000764
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author Wang, Liming
Xin, Jack
Nie, Qing
author_facet Wang, Liming
Xin, Jack
Nie, Qing
author_sort Wang, Liming
collection PubMed
description Feedback modules, which appear ubiquitously in biological regulations, are often subject to disturbances from the input, leading to fluctuations in the output. Thus, the question becomes how a feedback system can produce a faithful response with a noisy input. We employed multiple time scale analysis, Fluctuation Dissipation Theorem, linear stability, and numerical simulations to investigate a module with one positive feedback loop driven by an external stimulus, and we obtained a critical quantity in noise attenuation, termed as “signed activation time”. We then studied the signed activation time for a system of two positive feedback loops, a system of one positive feedback loop and one negative feedback loop, and six other existing biological models consisting of multiple components along with positive and negative feedback loops. An inverse relationship is found between the noise amplification rate and the signed activation time, defined as the difference between the deactivation and activation time scales of the noise-free system, normalized by the frequency of noises presented in the input. Thus, the combination of fast activation and slow deactivation provides the best noise attenuation, and it can be attained in a single positive feedback loop system. An additional positive feedback loop often leads to a marked decrease in activation time, decrease or slight increase of deactivation time and allows larger kinetic rate variations for slow deactivation and fast activation. On the other hand, a negative feedback loop may increase the activation and deactivation times. The negative relationship between the noise amplification rate and the signed activation time also holds for the six other biological models with multiple components and feedback loops. This principle may be applicable to other feedback systems.
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spelling pubmed-28617022010-05-04 A Critical Quantity for Noise Attenuation in Feedback Systems Wang, Liming Xin, Jack Nie, Qing PLoS Comput Biol Research Article Feedback modules, which appear ubiquitously in biological regulations, are often subject to disturbances from the input, leading to fluctuations in the output. Thus, the question becomes how a feedback system can produce a faithful response with a noisy input. We employed multiple time scale analysis, Fluctuation Dissipation Theorem, linear stability, and numerical simulations to investigate a module with one positive feedback loop driven by an external stimulus, and we obtained a critical quantity in noise attenuation, termed as “signed activation time”. We then studied the signed activation time for a system of two positive feedback loops, a system of one positive feedback loop and one negative feedback loop, and six other existing biological models consisting of multiple components along with positive and negative feedback loops. An inverse relationship is found between the noise amplification rate and the signed activation time, defined as the difference between the deactivation and activation time scales of the noise-free system, normalized by the frequency of noises presented in the input. Thus, the combination of fast activation and slow deactivation provides the best noise attenuation, and it can be attained in a single positive feedback loop system. An additional positive feedback loop often leads to a marked decrease in activation time, decrease or slight increase of deactivation time and allows larger kinetic rate variations for slow deactivation and fast activation. On the other hand, a negative feedback loop may increase the activation and deactivation times. The negative relationship between the noise amplification rate and the signed activation time also holds for the six other biological models with multiple components and feedback loops. This principle may be applicable to other feedback systems. Public Library of Science 2010-04-29 /pmc/articles/PMC2861702/ /pubmed/20442870 http://dx.doi.org/10.1371/journal.pcbi.1000764 Text en Wang et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Wang, Liming
Xin, Jack
Nie, Qing
A Critical Quantity for Noise Attenuation in Feedback Systems
title A Critical Quantity for Noise Attenuation in Feedback Systems
title_full A Critical Quantity for Noise Attenuation in Feedback Systems
title_fullStr A Critical Quantity for Noise Attenuation in Feedback Systems
title_full_unstemmed A Critical Quantity for Noise Attenuation in Feedback Systems
title_short A Critical Quantity for Noise Attenuation in Feedback Systems
title_sort critical quantity for noise attenuation in feedback systems
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861702/
https://www.ncbi.nlm.nih.gov/pubmed/20442870
http://dx.doi.org/10.1371/journal.pcbi.1000764
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