Cargando…

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

BACKGROUND: One of main aims of Molecular Biology is the gain of knowledge about how molecular components interact each other and to understand gene function regulations. Using microarray technology, it is possible to extract measurements of thousands of genes into a single analysis step having a pi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zoppoli, Pietro, Morganella, Sandro, Ceccarelli, Michele
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862045/ https://www.ncbi.nlm.nih.gov/pubmed/20338053 http://dx.doi.org/10.1186/1471-2105-11-154

Ejemplares similares

IRIS: a method for reverse engineering of regulatory relations in gene networks
por: Morganella, Sandro, et al.
Publicado: (2009)

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information
por: Lachmann, Alexander, et al.
Publicado: (2016)

Advances in analysis and control of timedelayed dynamical systems
por: Sun, Jianqiao, et al.
Publicado: (2013)

hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests
por: Jang, In Sock, et al.
Publicado: (2013)

VEGAWES: variational segmentation on whole exome sequencing for copy number detection
por: Anjum, Samreen, et al.
Publicado: (2015)

Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks
por: Chaitankar, Vijender, et al.
Publicado: (2010)

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context
por: Margolin, Adam A, et al.
Publicado: (2006)

Selection of reference genes for diurnal and developmental time-course real-time PCR expression analyses in lettuce
por: Sgamma, Tiziana, et al.
Publicado: (2016)

ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networks
por: Chávez Montes, Ricardo A, et al.
Publicado: (2014)

Information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments
por: Liu, Tianqing, et al.
Publicado: (2009)

Reverse Engineering Cellular Networks with Information Theoretic Methods
por: Villaverde, Alejandro F., et al.
Publicado: (2013)

Multivariate curve resolution of time course microarray data
por: Wentzell, Peter D, et al.
Publicado: (2006)

Robust test method for time-course microarray experiments
por: Sohn, Insuk, et al.
Publicado: (2010)

Manipulation of visual biofeedback during gait with a time delayed adaptive Virtual Mirror Box
por: Barton, Gabor J, et al.
Publicado: (2014)

Identifying time-delayed gene regulatory networks via an evolvable hierarchical recurrent neural network
por: Kordmahalleh, Mina Moradi, et al.
Publicado: (2017)

Study of Meta-analysis strategies for network inference using information-theoretic approaches
por: Pham, Ngoc C., et al.
Publicado: (2017)

Incorporating time-delays in S-System model for reverse engineering genetic networks
por: Chowdhury, Ahsan Raja, et al.
Publicado: (2013)

Integrative analysis of time course metabolic data and biomarker discovery
por: Jendoubi, Takoua, et al.
Publicado: (2020)

Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription
por: Vilfan, Igor D, et al.
Publicado: (2013)

A time-responsive tool for informing policy making: rapid realist review
por: Saul, Jessie E, et al.
Publicado: (2013)

Partial mixture model for tight clustering of gene expression time-course
por: Yuan, Yinyin, et al.
Publicado: (2008)

Difference-based clustering of short time-course microarray data with replicates
por: Kim, Jihoon, et al.
Publicado: (2007)

A permutation-based multiple testing method for time-course microarray experiments
por: Sohn, Insuk, et al.
Publicado: (2009)

Improving the accuracy of expression data analysis in time course experiments using resampling
por: Walter, Wencke, et al.
Publicado: (2014)

Sequence-based information-theoretic features for gene essentiality prediction
por: Nigatu, Dawit, et al.
Publicado: (2017)

Recursive regularization for inferring gene networks from time-course gene expression profiles
por: Shimamura, Teppei, et al.
Publicado: (2009)

Reducing multi-sensor data to a single time course that reveals experimental effects
por: Schurger, Aaron, et al.
Publicado: (2013)

TTCA: an R package for the identification of differentially expressed genes in time course microarray data
por: Albrecht, Marco, et al.
Publicado: (2017)

Day time, night time, over time: geographic and temporal uncertainty when linking event and contextual data
por: Folch, David C., et al.
Publicado: (2021)

A reverse-engineering approach to dissect post-translational modulators of transcription factor’s activity from transcriptional data
por: Gambardella, Gennaro, et al.
Publicado: (2015)

Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling
por: Li, Xia, et al.
Publicado: (2006)

Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach
por: von Stosch, Moritz, et al.
Publicado: (2010)

Stimulation-mediated reverse engineering of silent neural networks
por: Ren, Xiaoxuan, et al.
Publicado: (2023)

Developing theory-informed behaviour change interventions to implement evidence into practice: a systematic approach using the Theoretical Domains Framework
por: French, Simon D, et al.
Publicado: (2012)

Ranking genomic features using an information-theoretic measure of epigenetic discordance
por: Jenkinson, Garrett, et al.
Publicado: (2019)

Optimized permutation testing for information theoretic measures of multi-gene interactions
por: Kunert-Graf, James M., et al.
Publicado: (2021)

Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data
por: Ahdesmäki, Miika, et al.
Publicado: (2007)

A comparison of the functional modules identified from time course and static PPI network data
por: Tang, Xiwei, et al.
Publicado: (2011)

Dynamic probabilistic threshold networks to infer signaling pathways from time-course perturbation data
por: Kiani, Narsis A, et al.
Publicado: (2014)

Development of real-time and lateral flow strip reverse transcription recombinase polymerase Amplification assays for rapid detection of peste des petits ruminants virus
por: Yang, Yang, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_0eeiao9df79l5nkllq03u1b5tt