XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments

We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has s...

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Detalles Bibliográficos
Autores principales: Swertz, Morris A, Velde, K Joeri van der, Tesson, Bruno M, Scheltema, Richard A, Arends, Danny, Vera, Gonzalo, Alberts, Rudi, Dijkstra, Martijn, Schofield, Paul, Schughart, Klaus, Hancock, John M, Smedley, Damian, Wolstencroft, Katy, Goble, Carole, de Brock, Engbert O, Jones, Andrew R, Parkinson, Helen E, Jansen, Ritsert C
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864567/
https://www.ncbi.nlm.nih.gov/pubmed/20214801
http://dx.doi.org/10.1186/gb-2010-11-3-r27
Descripción
Sumario:We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans.

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