XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments

We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has s...

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Autores principales: Swertz, Morris A, Velde, K Joeri van der, Tesson, Bruno M, Scheltema, Richard A, Arends, Danny, Vera, Gonzalo, Alberts, Rudi, Dijkstra, Martijn, Schofield, Paul, Schughart, Klaus, Hancock, John M, Smedley, Damian, Wolstencroft, Katy, Goble, Carole, de Brock, Engbert O, Jones, Andrew R, Parkinson, Helen E, Jansen, Ritsert C
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864567/
https://www.ncbi.nlm.nih.gov/pubmed/20214801
http://dx.doi.org/10.1186/gb-2010-11-3-r27
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author Swertz, Morris A
Velde, K Joeri van der
Tesson, Bruno M
Scheltema, Richard A
Arends, Danny
Vera, Gonzalo
Alberts, Rudi
Dijkstra, Martijn
Schofield, Paul
Schughart, Klaus
Hancock, John M
Smedley, Damian
Wolstencroft, Katy
Goble, Carole
de Brock, Engbert O
Jones, Andrew R
Parkinson, Helen E
Jansen, Ritsert C
author_facet Swertz, Morris A
Velde, K Joeri van der
Tesson, Bruno M
Scheltema, Richard A
Arends, Danny
Vera, Gonzalo
Alberts, Rudi
Dijkstra, Martijn
Schofield, Paul
Schughart, Klaus
Hancock, John M
Smedley, Damian
Wolstencroft, Katy
Goble, Carole
de Brock, Engbert O
Jones, Andrew R
Parkinson, Helen E
Jansen, Ritsert C
author_sort Swertz, Morris A
collection PubMed
description We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans.
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spelling pubmed-28645672010-05-05 XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments Swertz, Morris A Velde, K Joeri van der Tesson, Bruno M Scheltema, Richard A Arends, Danny Vera, Gonzalo Alberts, Rudi Dijkstra, Martijn Schofield, Paul Schughart, Klaus Hancock, John M Smedley, Damian Wolstencroft, Katy Goble, Carole de Brock, Engbert O Jones, Andrew R Parkinson, Helen E Jansen, Ritsert C Genome Biol Software We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans. BioMed Central 2010 2010-03-09 /pmc/articles/PMC2864567/ /pubmed/20214801 http://dx.doi.org/10.1186/gb-2010-11-3-r27 Text en Copyright ©2010 Swertz et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Swertz, Morris A
Velde, K Joeri van der
Tesson, Bruno M
Scheltema, Richard A
Arends, Danny
Vera, Gonzalo
Alberts, Rudi
Dijkstra, Martijn
Schofield, Paul
Schughart, Klaus
Hancock, John M
Smedley, Damian
Wolstencroft, Katy
Goble, Carole
de Brock, Engbert O
Jones, Andrew R
Parkinson, Helen E
Jansen, Ritsert C
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
title XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
title_full XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
title_fullStr XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
title_full_unstemmed XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
title_short XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
title_sort xgap: a uniform and extensible data model and software platform for genotype and phenotype experiments
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864567/
https://www.ncbi.nlm.nih.gov/pubmed/20214801
http://dx.doi.org/10.1186/gb-2010-11-3-r27
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