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Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources

A neuroinformatics (NI) system is critical to brain imaging research in order to shorten the time between study conception and results. Such a NI system is required to scale well when large numbers of subjects are studied. Further, when multiple sites participate in research projects organizational...

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Autores principales: Bockholt, Henry J., Scully, Mark, Courtney, William, Rachakonda, Srinivas, Scott, Adam, Caprihan, Arvind, Fries, Jill, Kalyanam, Ravi, Segall, Judith M., de la Garza, Raul, Lane, Susan, Calhoun, Vince D.
Formato: Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2866565/
https://www.ncbi.nlm.nih.gov/pubmed/20461147
http://dx.doi.org/10.3389/neuro.11.036.2009
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author Bockholt, Henry J.
Scully, Mark
Courtney, William
Rachakonda, Srinivas
Scott, Adam
Caprihan, Arvind
Fries, Jill
Kalyanam, Ravi
Segall, Judith M.
de la Garza, Raul
Lane, Susan
Calhoun, Vince D.
author_facet Bockholt, Henry J.
Scully, Mark
Courtney, William
Rachakonda, Srinivas
Scott, Adam
Caprihan, Arvind
Fries, Jill
Kalyanam, Ravi
Segall, Judith M.
de la Garza, Raul
Lane, Susan
Calhoun, Vince D.
author_sort Bockholt, Henry J.
collection PubMed
description A neuroinformatics (NI) system is critical to brain imaging research in order to shorten the time between study conception and results. Such a NI system is required to scale well when large numbers of subjects are studied. Further, when multiple sites participate in research projects organizational issues become increasingly difficult. Optimized NI applications mitigate these problems. Additionally, NI software enables coordination across multiple studies, leveraging advantages potentially leading to exponential research discoveries. The web-based, Mind Research Network (MRN), database system has been designed and improved through our experience with 200 research studies and 250 researchers from seven different institutions. The MRN tools permit the collection, management, reporting and efficient use of large scale, heterogeneous data sources, e.g., multiple institutions, multiple principal investigators, multiple research programs and studies, and multimodal acquisitions. We have collected and analyzed data sets on thousands of research participants and have set up a framework to automatically analyze the data, thereby making efficient, practical data mining of this vast resource possible. This paper presents a comprehensive framework for capturing and analyzing heterogeneous neuroscience research data sources that has been fully optimized for end-users to perform novel data mining.
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spelling pubmed-28665652010-05-11 Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources Bockholt, Henry J. Scully, Mark Courtney, William Rachakonda, Srinivas Scott, Adam Caprihan, Arvind Fries, Jill Kalyanam, Ravi Segall, Judith M. de la Garza, Raul Lane, Susan Calhoun, Vince D. Front Neuroinformatics Neuroscience A neuroinformatics (NI) system is critical to brain imaging research in order to shorten the time between study conception and results. Such a NI system is required to scale well when large numbers of subjects are studied. Further, when multiple sites participate in research projects organizational issues become increasingly difficult. Optimized NI applications mitigate these problems. Additionally, NI software enables coordination across multiple studies, leveraging advantages potentially leading to exponential research discoveries. The web-based, Mind Research Network (MRN), database system has been designed and improved through our experience with 200 research studies and 250 researchers from seven different institutions. The MRN tools permit the collection, management, reporting and efficient use of large scale, heterogeneous data sources, e.g., multiple institutions, multiple principal investigators, multiple research programs and studies, and multimodal acquisitions. We have collected and analyzed data sets on thousands of research participants and have set up a framework to automatically analyze the data, thereby making efficient, practical data mining of this vast resource possible. This paper presents a comprehensive framework for capturing and analyzing heterogeneous neuroscience research data sources that has been fully optimized for end-users to perform novel data mining. Frontiers Research Foundation 2010-04-21 /pmc/articles/PMC2866565/ /pubmed/20461147 http://dx.doi.org/10.3389/neuro.11.036.2009 Text en Copyright © 2010 Bockholt, Scully, Courtney, Rachakonda, Scott, Caprihan, Fries, Kalyanam, Segall, de la Garza, Lane and Calhoun. http://www.frontiersin.org/licenseagreement This is an open-access article subject to an exclusive license agreement between the authors and the Frontiers Research Foundation, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
spellingShingle Neuroscience
Bockholt, Henry J.
Scully, Mark
Courtney, William
Rachakonda, Srinivas
Scott, Adam
Caprihan, Arvind
Fries, Jill
Kalyanam, Ravi
Segall, Judith M.
de la Garza, Raul
Lane, Susan
Calhoun, Vince D.
Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources
title Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources
title_full Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources
title_fullStr Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources
title_full_unstemmed Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources
title_short Mining the Mind Research Network: A Novel Framework for Exploring Large Scale, Heterogeneous Translational Neuroscience Research Data Sources
title_sort mining the mind research network: a novel framework for exploring large scale, heterogeneous translational neuroscience research data sources
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2866565/
https://www.ncbi.nlm.nih.gov/pubmed/20461147
http://dx.doi.org/10.3389/neuro.11.036.2009
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