Cargando…

DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing

BACKGROUND: DNA copy number variations occur within populations and aberrations can cause disease. We sought to develop an improved lab-automatable, cost-efficient, accurate platform to profile DNA copy number. RESULTS: We developed a sequencing-based assay of nuclear, mitochondrial, and telomeric D...

Descripción completa

Detalles Bibliográficos
Autores principales:	Castle, John C, Biery, Matthew, Bouzek, Heather, Xie, Tao, Chen, Ronghua, Misura, Kira, Jackson, Stuart, Armour, Christopher D, Johnson, Jason M, Rohl, Carol A, Raymond, Christopher K
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867831/ https://www.ncbi.nlm.nih.gov/pubmed/20398377 http://dx.doi.org/10.1186/1471-2164-11-244

Ejemplares similares

Digital Genome-Wide ncRNA Expression, Including SnoRNAs, across 11 Human Tissues Using PolyA-Neutral Amplification
por: Castle, John C., et al.
Publicado: (2010)

Quadruplex MAPH: improvement of throughput in high-resolution copy number screening
por: Tyson, Jess, et al.
Publicado: (2009)

Development of copy number assays for detection and surveillance of piperaquine resistance associated plasmepsin 2/3 copy number variation in Plasmodium falciparum
por: Ansbro, Megan R., et al.
Publicado: (2020)

Microarray MAPH: accurate array-based detection of relative copy number in genomic DNA
por: Gibbons, Brian, et al.
Publicado: (2006)

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation
por: Babak, Tomas, et al.
Publicado: (2010)

Accurate measurement of gene copy number for human alpha-defensin DEFA1A3
por: Khan, Fayeza F, et al.
Publicado: (2013)

Copy number variation analysis based on AluScan sequences
por: Yang, Jian-Feng, et al.
Publicado: (2014)

DeviCNV: detection and visualization of exon-level copy number variants in targeted next-generation sequencing data
por: Kang, Yeeok, et al.
Publicado: (2018)

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data
por: Chen, Yong, et al.
Publicado: (2017)

Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing
por: Ozer, Hatice Gulcin, et al.
Publicado: (2015)

Noise cancellation using total variation for copy number variation detection
por: Zare, Fatima, et al.
Publicado: (2018)

Improving high-resolution copy number variation analysis from next generation sequencing using unique molecular identifiers
por: Viailly, Pierre-Julien, et al.
Publicado: (2021)

Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations
por: Jiang, Hongmei, et al.
Publicado: (2011)

Reliable transgene-independent method for determining Sleeping Beauty transposon copy numbers
por: Kolacsek, Orsolya, et al.
Publicado: (2011)

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
por: Angly, Florent E, et al.
Publicado: (2014)

A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer
por: Chi, Chen, et al.
Publicado: (2016)

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data
por: Song, Lei, et al.
Publicado: (2017)

CNV Radar: an improved method for somatic copy number alteration characterization in oncology
por: Soong, David, et al.
Publicado: (2020)

Copy number variation signature to predict human ancestry
por: Pronold, Melissa, et al.
Publicado: (2012)

Inferring copy number and genotype in tumour exome data
por: Amarasinghe, Kaushalya C, et al.
Publicado: (2014)

Copy number variation genotyping using family information
por: Chu, Jen-hwa, et al.
Publicado: (2013)

Prospective Associations of Early Pregnancy Metal Mixtures with Mitochondria DNA Copy Number and Telomere Length in Maternal and Cord Blood
por: Smith, Anna R., et al.
Publicado: (2021)

RefCNV: Identification of Gene-Based Copy Number Variants Using Whole Exome Sequencing
por: Chang, Lun-Ching, et al.
Publicado: (2016)

Epidermal Growth Factor (EGFR) copy number aberrations in esophageal and gastro-esophageal junctional carcinoma
por: Dahle-Smith, Åsa, et al.
Publicado: (2015)

Normalization of array-CGH data: influence of copy number imbalances
por: Staaf, Johan, et al.
Publicado: (2007)

Inference of chromosome-specific copy numbers using population haplotypes
por: Huang, Yao-Ting, et al.
Publicado: (2011)

Reconstructing DNA copy number by joint segmentation of multiple sequences
por: Zhang, Zhongyang, et al.
Publicado: (2012)

Effective normalization for copy number variation in Hi-C data
por: Servant, Nicolas, et al.
Publicado: (2018)

Normalization using ploidy and genomic DNA copy number allows absolute quantification of transcripts, proteins and metabolites in cells
por: Shimada, Hiroshi, et al.
Publicado: (2010)

Bayesian model to detect phenotype-specific genes for copy number data
por: González, Juan R, et al.
Publicado: (2012)

Simple binary segmentation frameworks for identifying variation in DNA copy number
por: Yang, Tae Young
Publicado: (2012)

VEGAWES: variational segmentation on whole exome sequencing for copy number detection
por: Anjum, Samreen, et al.
Publicado: (2015)

A comparison of genomic copy number calls by Partek Genomics Suite, Genotyping Console and Birdsuite algorithms to quantitative PCR
por: Grayson, Britney L, et al.
Publicado: (2011)

Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models
por: Zheng, Xingyu, et al.
Publicado: (2020)

Using expression arrays for copy number detection: an example from E. coli
por: Skvortsov, Dmitriy, et al.
Publicado: (2007)

Fast MCMC sampling for hidden markov models to determine copy number variations
por: Mahmud, Md Pavel, et al.
Publicado: (2011)

DBS: a fast and informative segmentation algorithm for DNA copy number analysis
por: Ruan, Jun, et al.
Publicado: (2019)

MCKAT: a multi-dimensional copy number variant kernel association test
por: Maus Esfahani, Nastaran, et al.
Publicado: (2021)

In silico molecular cytogenetics: a bioinformatic approach to prioritization of candidate genes and copy number variations for basic and clinical genome research
por: Iourov, Ivan Y, et al.
Publicado: (2014)

IMPLANT: a new technique for transgene copy number estimation in plants using a single end-point PCR reaction
por: De Saeger, Jonas, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_2bq4r8l782hdd5b5t6atk4n99t