Arcadia: a visualization tool for metabolic pathways

Summary: Arcadia translates text-based descriptions of biological networks (SBML files) into standardized diagrams (SBGN PD maps). Users can view the same model from different perspectives and easily alter the layout to emulate traditional textbook representations. Availability and Implementation: A...

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Detalles Bibliográficos
Autores principales: Villéger, Alice C., Pettifer, Stephen R., Kell, Douglas B.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2872004/
https://www.ncbi.nlm.nih.gov/pubmed/20453003
http://dx.doi.org/10.1093/bioinformatics/btq154
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author Villéger, Alice C.
Pettifer, Stephen R.
Kell, Douglas B.
author_facet Villéger, Alice C.
Pettifer, Stephen R.
Kell, Douglas B.
author_sort Villéger, Alice C.
collection PubMed
description Summary: Arcadia translates text-based descriptions of biological networks (SBML files) into standardized diagrams (SBGN PD maps). Users can view the same model from different perspectives and easily alter the layout to emulate traditional textbook representations. Availability and Implementation: Arcadia is written in C++. The source code is available (along with Mac OS and Windows binaries) under the GPL from http://arcadiapathways.sourceforge.net/ Contact: alice.villeger@manchester.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-28720042010-05-24 Arcadia: a visualization tool for metabolic pathways Villéger, Alice C. Pettifer, Stephen R. Kell, Douglas B. Bioinformatics Applications Note Summary: Arcadia translates text-based descriptions of biological networks (SBML files) into standardized diagrams (SBGN PD maps). Users can view the same model from different perspectives and easily alter the layout to emulate traditional textbook representations. Availability and Implementation: Arcadia is written in C++. The source code is available (along with Mac OS and Windows binaries) under the GPL from http://arcadiapathways.sourceforge.net/ Contact: alice.villeger@manchester.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2010-06-01 2010-05-07 /pmc/articles/PMC2872004/ /pubmed/20453003 http://dx.doi.org/10.1093/bioinformatics/btq154 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Villéger, Alice C.
Pettifer, Stephen R.
Kell, Douglas B.
Arcadia: a visualization tool for metabolic pathways
title Arcadia: a visualization tool for metabolic pathways
title_full Arcadia: a visualization tool for metabolic pathways
title_fullStr Arcadia: a visualization tool for metabolic pathways
title_full_unstemmed Arcadia: a visualization tool for metabolic pathways
title_short Arcadia: a visualization tool for metabolic pathways
title_sort arcadia: a visualization tool for metabolic pathways
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2872004/
https://www.ncbi.nlm.nih.gov/pubmed/20453003
http://dx.doi.org/10.1093/bioinformatics/btq154
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AT pettiferstephenr arcadiaavisualizationtoolformetabolicpathways
AT kelldouglasb arcadiaavisualizationtoolformetabolicpathways

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