Cargando…
Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks
Exposure to environmental chemicals and drugs may have a negative effect on human health. A better understanding of the molecular mechanism of such compounds is needed to determine the risk. We present a high confidence human protein-protein association network built upon the integration of chemical...
Autores principales: | , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2010
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873901/ https://www.ncbi.nlm.nih.gov/pubmed/20502671 http://dx.doi.org/10.1371/journal.pcbi.1000788 |
_version_ | 1782181408575324160 |
---|---|
author | Audouze, Karine Juncker, Agnieszka Sierakowska Roque, Francisco J. S. S. A. Krysiak-Baltyn, Konrad Weinhold, Nils Taboureau, Olivier Jensen, Thomas Skøt Brunak, Søren |
author_facet | Audouze, Karine Juncker, Agnieszka Sierakowska Roque, Francisco J. S. S. A. Krysiak-Baltyn, Konrad Weinhold, Nils Taboureau, Olivier Jensen, Thomas Skøt Brunak, Søren |
author_sort | Audouze, Karine |
collection | PubMed |
description | Exposure to environmental chemicals and drugs may have a negative effect on human health. A better understanding of the molecular mechanism of such compounds is needed to determine the risk. We present a high confidence human protein-protein association network built upon the integration of chemical toxicology and systems biology. This computational systems chemical biology model reveals uncharacterized connections between compounds and diseases, thus predicting which compounds may be risk factors for human health. Additionally, the network can be used to identify unexpected potential associations between chemicals and proteins. Examples are shown for chemicals associated with breast cancer, lung cancer and necrosis, and potential protein targets for di-ethylhexyl-phthalate, 2,3,7,8-tetrachlorodibenzo-p-dioxin, pirinixic acid and permethrine. The chemical-protein associations are supported through recent published studies, which illustrate the power of our approach that integrates toxicogenomics data with other data types. |
format | Text |
id | pubmed-2873901 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-28739012010-05-25 Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks Audouze, Karine Juncker, Agnieszka Sierakowska Roque, Francisco J. S. S. A. Krysiak-Baltyn, Konrad Weinhold, Nils Taboureau, Olivier Jensen, Thomas Skøt Brunak, Søren PLoS Comput Biol Research Article Exposure to environmental chemicals and drugs may have a negative effect on human health. A better understanding of the molecular mechanism of such compounds is needed to determine the risk. We present a high confidence human protein-protein association network built upon the integration of chemical toxicology and systems biology. This computational systems chemical biology model reveals uncharacterized connections between compounds and diseases, thus predicting which compounds may be risk factors for human health. Additionally, the network can be used to identify unexpected potential associations between chemicals and proteins. Examples are shown for chemicals associated with breast cancer, lung cancer and necrosis, and potential protein targets for di-ethylhexyl-phthalate, 2,3,7,8-tetrachlorodibenzo-p-dioxin, pirinixic acid and permethrine. The chemical-protein associations are supported through recent published studies, which illustrate the power of our approach that integrates toxicogenomics data with other data types. Public Library of Science 2010-05-20 /pmc/articles/PMC2873901/ /pubmed/20502671 http://dx.doi.org/10.1371/journal.pcbi.1000788 Text en Audouze et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Audouze, Karine Juncker, Agnieszka Sierakowska Roque, Francisco J. S. S. A. Krysiak-Baltyn, Konrad Weinhold, Nils Taboureau, Olivier Jensen, Thomas Skøt Brunak, Søren Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks |
title | Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks |
title_full | Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks |
title_fullStr | Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks |
title_full_unstemmed | Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks |
title_short | Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks |
title_sort | deciphering diseases and biological targets for environmental chemicals using toxicogenomics networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873901/ https://www.ncbi.nlm.nih.gov/pubmed/20502671 http://dx.doi.org/10.1371/journal.pcbi.1000788 |
work_keys_str_mv | AT audouzekarine decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT junckeragnieszkasierakowska decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT roquefranciscojssa decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT krysiakbaltynkonrad decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT weinholdnils decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT taboureauolivier decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT jensenthomasskøt decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks AT brunaksøren decipheringdiseasesandbiologicaltargetsforenvironmentalchemicalsusingtoxicogenomicsnetworks |