Cargando…

NetCTLpan: pan-specific MHC class I pathway epitope predictions

Reliable predictions of immunogenic peptides are essential in rational vaccine design and can minimize the experimental effort needed to identify epitopes. In this work, we describe a pan-specific major histocompatibility complex (MHC) class I epitope predictor, NetCTLpan. The method integrates pred...

Descripción completa

Detalles Bibliográficos
Autores principales:	Stranzl, Thomas, Larsen, Mette Voldby, Lundegaard, Claus, Nielsen, Morten
Formato:	Texto
Lenguaje:	English
Publicado:	Springer-Verlag 2010
Materias:	Original Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875469/ https://www.ncbi.nlm.nih.gov/pubmed/20379710 http://dx.doi.org/10.1007/s00251-010-0441-4

Ejemplares similares

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
por: Lundegaard, Claus, et al.
Publicado: (2008)

The Cancer Exome Generated by Alternative mRNA Splicing Dilutes Predicted HLA Class I Epitope Density
por: Stranzl, Thomas, et al.
Publicado: (2012)

Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength
por: Lund, Ole, et al.
Publicado: (2011)

Correction: Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength
por: Lund, Ole, et al.
Publicado: (2011)

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
por: Nielsen, Morten, et al.
Publicado: (2007)

Structural Properties of MHC Class II Ligands, Implications for the Prediction of MHC Class II Epitopes
por: Jørgensen, Kasper Winther, et al.
Publicado: (2010)

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
por: Larsen, Mette V, et al.
Publicado: (2007)

NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure
por: Nielsen, Morten, et al.
Publicado: (2010)

Characterization of Antigenic MHC-Class-I-Restricted T Cell Epitopes in the Glycoprotein of Ebolavirus
por: Powlson, Jonathan, et al.
Publicado: (2019)

Identification of CD8(+) T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL
por: Larsen, Mette Voldby, et al.
Publicado: (2010)

Predicting MHC class I epitopes in large datasets
por: Roomp, Kirsten, et al.
Publicado: (2010)

Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system
por: Paul, Sinu, et al.
Publicado: (2020)

State of the art and challenges in sequence based T-cell epitope prediction
por: Lundegaard, Claus, et al.
Publicado: (2010)

Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking
por: Kringelum, Jens Vindahl, et al.
Publicado: (2012)

NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets
por: Nielsen, Morten, et al.
Publicado: (2016)

Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction
por: Han, Youngmahn, et al.
Publicado: (2017)

CapsNet-MHC predicts peptide-MHC class I binding based on capsule neural networks
por: Kalemati, Mahmood, et al.
Publicado: (2023)

An immunodominant epitope present in multiple class I MHC molecules and recognized by cytotoxic T lymphocytes
Publicado: (1988)

Prediction and validation of murine MHC class I epitopes of the recombinant virus VSV-GP
por: Vijver, Saskia V., et al.
Publicado: (2023)

Metagenomic Analysis of Therapeutic PYO Phage Cocktails from 1997 to 2014
por: Villarroel, Julia, et al.
Publicado: (2017)

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
por: Peters, Bjoern, et al.
Publicado: (2006)

A combination of epitope prediction and molecular docking allows for good identification of MHC class I restricted T-cell epitopes
por: Zhang, Xue Wu
Publicado: (2013)

Porcine major histocompatibility complex (MHC) class I molecules and analysis of their peptide-binding specificities
por: Pedersen, Lasse Eggers, et al.
Publicado: (2011)

Folding of Matrix Metalloproteinase-2 Prevents Endogenous Generation of MHC Class-I Restricted Epitope
por: Renaud, Virginie, et al.
Publicado: (2010)

MHC class I multimers
por: Sun, Mei-Yi, et al.
Publicado: (2001)

Epitopes associated with MHC restriction site of T cells. III. I-J epitope on MHC-restricted T helper cells
Publicado: (1987)

MHC Class I Bound to an Immunodominant Theileria parva Epitope Demonstrates Unconventional Presentation to T Cell Receptors
por: Macdonald, Isabel K., et al.
Publicado: (2010)

MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model
por: Venkatesh, Gopalakrishnan, et al.
Publicado: (2020)

MHC2SKpan: a novel kernel based approach for pan-specific MHC class II peptide binding prediction
por: Guo, Linyuan, et al.
Publicado: (2013)

NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions
por: Alvarez, Bruno, et al.
Publicado: (2019)

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets
por: Jurtz, Vanessa Isabell, et al.
Publicado: (2016)

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
por: Reynisson, Birkir, et al.
Publicado: (2020)

Activation and detection of HTLV-I Tax-specific CTLs by Epitope expressing Single-Chain Trimers of MHC Class I in a rat model
por: Ohashi, Takashi, et al.
Publicado: (2008)

TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes
por: Jensen, Kamilla Kjærgaard, et al.
Publicado: (2019)

Immune epitope database analysis resource
por: Kim, Yohan, et al.
Publicado: (2012)

Experimental Validation of Multi-Epitope Peptides Including Promising MHC Class I- and II-Restricted Epitopes of Four Known Leishmania infantum Proteins
por: Agallou, Maria, et al.
Publicado: (2014)

MHC Class I Presented T Cell Epitopes as Potential Antigens for Therapeutic Vaccine against HBV Chronic Infection
por: Comber, Joseph D., et al.
Publicado: (2014)

In silico and in vitro arboviral MHC class I-restricted-epitope signatures reveal immunodominance and poor overlapping patterns
por: Lopes-Ribeiro, Ágata, et al.
Publicado: (2022)

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan
por: Nielsen, Morten, et al.
Publicado: (2008)

HLA-DO as the Optimizer of Epitope Selection for MHC Class II Antigen Presentation
por: Poluektov, Yuri O., et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_bbdbrh2l7a9cath53dgdkov65c