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Metadata matters: access to image data in the real world
Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. Thi...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
The Rockefeller University Press
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878938/ https://www.ncbi.nlm.nih.gov/pubmed/20513764 http://dx.doi.org/10.1083/jcb.201004104 |
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author | Linkert, Melissa Rueden, Curtis T. Allan, Chris Burel, Jean-Marie Moore, Will Patterson, Andrew Loranger, Brian Moore, Josh Neves, Carlos MacDonald, Donald Tarkowska, Aleksandra Sticco, Caitlin Hill, Emma Rossner, Mike Eliceiri, Kevin W. Swedlow, Jason R. |
author_facet | Linkert, Melissa Rueden, Curtis T. Allan, Chris Burel, Jean-Marie Moore, Will Patterson, Andrew Loranger, Brian Moore, Josh Neves, Carlos MacDonald, Donald Tarkowska, Aleksandra Sticco, Caitlin Hill, Emma Rossner, Mike Eliceiri, Kevin W. Swedlow, Jason R. |
author_sort | Linkert, Melissa |
collection | PubMed |
description | Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository. |
format | Text |
id | pubmed-2878938 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | The Rockefeller University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-28789382010-11-30 Metadata matters: access to image data in the real world Linkert, Melissa Rueden, Curtis T. Allan, Chris Burel, Jean-Marie Moore, Will Patterson, Andrew Loranger, Brian Moore, Josh Neves, Carlos MacDonald, Donald Tarkowska, Aleksandra Sticco, Caitlin Hill, Emma Rossner, Mike Eliceiri, Kevin W. Swedlow, Jason R. J Cell Biol Reviews Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository. The Rockefeller University Press 2010-05-31 /pmc/articles/PMC2878938/ /pubmed/20513764 http://dx.doi.org/10.1083/jcb.201004104 Text en © 2010 Linkert et al. This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/). |
spellingShingle | Reviews Linkert, Melissa Rueden, Curtis T. Allan, Chris Burel, Jean-Marie Moore, Will Patterson, Andrew Loranger, Brian Moore, Josh Neves, Carlos MacDonald, Donald Tarkowska, Aleksandra Sticco, Caitlin Hill, Emma Rossner, Mike Eliceiri, Kevin W. Swedlow, Jason R. Metadata matters: access to image data in the real world |
title | Metadata matters: access to image data in the real world |
title_full | Metadata matters: access to image data in the real world |
title_fullStr | Metadata matters: access to image data in the real world |
title_full_unstemmed | Metadata matters: access to image data in the real world |
title_short | Metadata matters: access to image data in the real world |
title_sort | metadata matters: access to image data in the real world |
topic | Reviews |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878938/ https://www.ncbi.nlm.nih.gov/pubmed/20513764 http://dx.doi.org/10.1083/jcb.201004104 |
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