Cargando…

Metadata matters: access to image data in the real world

Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. Thi...

Descripción completa

Detalles Bibliográficos
Autores principales: Linkert, Melissa, Rueden, Curtis T., Allan, Chris, Burel, Jean-Marie, Moore, Will, Patterson, Andrew, Loranger, Brian, Moore, Josh, Neves, Carlos, MacDonald, Donald, Tarkowska, Aleksandra, Sticco, Caitlin, Hill, Emma, Rossner, Mike, Eliceiri, Kevin W., Swedlow, Jason R.
Formato: Texto
Lenguaje:English
Publicado: The Rockefeller University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878938/
https://www.ncbi.nlm.nih.gov/pubmed/20513764
http://dx.doi.org/10.1083/jcb.201004104
_version_ 1782181893462032384
author Linkert, Melissa
Rueden, Curtis T.
Allan, Chris
Burel, Jean-Marie
Moore, Will
Patterson, Andrew
Loranger, Brian
Moore, Josh
Neves, Carlos
MacDonald, Donald
Tarkowska, Aleksandra
Sticco, Caitlin
Hill, Emma
Rossner, Mike
Eliceiri, Kevin W.
Swedlow, Jason R.
author_facet Linkert, Melissa
Rueden, Curtis T.
Allan, Chris
Burel, Jean-Marie
Moore, Will
Patterson, Andrew
Loranger, Brian
Moore, Josh
Neves, Carlos
MacDonald, Donald
Tarkowska, Aleksandra
Sticco, Caitlin
Hill, Emma
Rossner, Mike
Eliceiri, Kevin W.
Swedlow, Jason R.
author_sort Linkert, Melissa
collection PubMed
description Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository.
format Text
id pubmed-2878938
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher The Rockefeller University Press
record_format MEDLINE/PubMed
spelling pubmed-28789382010-11-30 Metadata matters: access to image data in the real world Linkert, Melissa Rueden, Curtis T. Allan, Chris Burel, Jean-Marie Moore, Will Patterson, Andrew Loranger, Brian Moore, Josh Neves, Carlos MacDonald, Donald Tarkowska, Aleksandra Sticco, Caitlin Hill, Emma Rossner, Mike Eliceiri, Kevin W. Swedlow, Jason R. J Cell Biol Reviews Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository. The Rockefeller University Press 2010-05-31 /pmc/articles/PMC2878938/ /pubmed/20513764 http://dx.doi.org/10.1083/jcb.201004104 Text en © 2010 Linkert et al. This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).
spellingShingle Reviews
Linkert, Melissa
Rueden, Curtis T.
Allan, Chris
Burel, Jean-Marie
Moore, Will
Patterson, Andrew
Loranger, Brian
Moore, Josh
Neves, Carlos
MacDonald, Donald
Tarkowska, Aleksandra
Sticco, Caitlin
Hill, Emma
Rossner, Mike
Eliceiri, Kevin W.
Swedlow, Jason R.
Metadata matters: access to image data in the real world
title Metadata matters: access to image data in the real world
title_full Metadata matters: access to image data in the real world
title_fullStr Metadata matters: access to image data in the real world
title_full_unstemmed Metadata matters: access to image data in the real world
title_short Metadata matters: access to image data in the real world
title_sort metadata matters: access to image data in the real world
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878938/
https://www.ncbi.nlm.nih.gov/pubmed/20513764
http://dx.doi.org/10.1083/jcb.201004104
work_keys_str_mv AT linkertmelissa metadatamattersaccesstoimagedataintherealworld
AT ruedencurtist metadatamattersaccesstoimagedataintherealworld
AT allanchris metadatamattersaccesstoimagedataintherealworld
AT bureljeanmarie metadatamattersaccesstoimagedataintherealworld
AT moorewill metadatamattersaccesstoimagedataintherealworld
AT pattersonandrew metadatamattersaccesstoimagedataintherealworld
AT lorangerbrian metadatamattersaccesstoimagedataintherealworld
AT moorejosh metadatamattersaccesstoimagedataintherealworld
AT nevescarlos metadatamattersaccesstoimagedataintherealworld
AT macdonalddonald metadatamattersaccesstoimagedataintherealworld
AT tarkowskaaleksandra metadatamattersaccesstoimagedataintherealworld
AT sticcocaitlin metadatamattersaccesstoimagedataintherealworld
AT hillemma metadatamattersaccesstoimagedataintherealworld
AT rossnermike metadatamattersaccesstoimagedataintherealworld
AT eliceirikevinw metadatamattersaccesstoimagedataintherealworld
AT swedlowjasonr metadatamattersaccesstoimagedataintherealworld