Cargando…

A soft kinetic data structure for lesion border detection

Motivation: The medical imaging and image processing techniques, ranging from microscopic to macroscopic, has become one of the main components of diagnostic procedures to assist dermatologists in their medical decision-making processes. Computer-aided segmentation and border detection on dermoscopi...

Descripción completa

Detalles Bibliográficos
Autores principales: Kockara, Sinan, Mete, Mutlu, Yip, Vincent, Lee, Brendan, Aydin, Kemal
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881363/
https://www.ncbi.nlm.nih.gov/pubmed/20529909
http://dx.doi.org/10.1093/bioinformatics/btq178
_version_ 1782182106795868160
author Kockara, Sinan
Mete, Mutlu
Yip, Vincent
Lee, Brendan
Aydin, Kemal
author_facet Kockara, Sinan
Mete, Mutlu
Yip, Vincent
Lee, Brendan
Aydin, Kemal
author_sort Kockara, Sinan
collection PubMed
description Motivation: The medical imaging and image processing techniques, ranging from microscopic to macroscopic, has become one of the main components of diagnostic procedures to assist dermatologists in their medical decision-making processes. Computer-aided segmentation and border detection on dermoscopic images is one of the core components of diagnostic procedures and therapeutic interventions for skin cancer. Automated assessment tools for dermoscopic images have become an important research field mainly because of inter- and intra-observer variations in human interpretations. In this study, a novel approach—graph spanner—for automatic border detection in dermoscopic images is proposed. In this approach, a proximity graph representation of dermoscopic images in order to detect regions and borders in skin lesion is presented. Results: Graph spanner approach is examined on a set of 100 dermoscopic images whose manually drawn borders by a dermatologist are used as the ground truth. Error rates, false positives and false negatives along with true positives and true negatives are quantified by digitally comparing results with manually determined borders from a dermatologist. The results show that the highest precision and recall rates obtained to determine lesion boundaries are 100%. However, accuracy of assessment averages out at 97.72% and borders errors' mean is 2.28% for whole dataset. Contact: skockara@uca.edu
format Text
id pubmed-2881363
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-28813632010-06-08 A soft kinetic data structure for lesion border detection Kockara, Sinan Mete, Mutlu Yip, Vincent Lee, Brendan Aydin, Kemal Bioinformatics Ismb 2010 Conference Proceedings July 11 to July 13, 2010, Boston, Ma, Usa Motivation: The medical imaging and image processing techniques, ranging from microscopic to macroscopic, has become one of the main components of diagnostic procedures to assist dermatologists in their medical decision-making processes. Computer-aided segmentation and border detection on dermoscopic images is one of the core components of diagnostic procedures and therapeutic interventions for skin cancer. Automated assessment tools for dermoscopic images have become an important research field mainly because of inter- and intra-observer variations in human interpretations. In this study, a novel approach—graph spanner—for automatic border detection in dermoscopic images is proposed. In this approach, a proximity graph representation of dermoscopic images in order to detect regions and borders in skin lesion is presented. Results: Graph spanner approach is examined on a set of 100 dermoscopic images whose manually drawn borders by a dermatologist are used as the ground truth. Error rates, false positives and false negatives along with true positives and true negatives are quantified by digitally comparing results with manually determined borders from a dermatologist. The results show that the highest precision and recall rates obtained to determine lesion boundaries are 100%. However, accuracy of assessment averages out at 97.72% and borders errors' mean is 2.28% for whole dataset. Contact: skockara@uca.edu Oxford University Press 2010-06-15 2010-06-01 /pmc/articles/PMC2881363/ /pubmed/20529909 http://dx.doi.org/10.1093/bioinformatics/btq178 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Ismb 2010 Conference Proceedings July 11 to July 13, 2010, Boston, Ma, Usa
Kockara, Sinan
Mete, Mutlu
Yip, Vincent
Lee, Brendan
Aydin, Kemal
A soft kinetic data structure for lesion border detection
title A soft kinetic data structure for lesion border detection
title_full A soft kinetic data structure for lesion border detection
title_fullStr A soft kinetic data structure for lesion border detection
title_full_unstemmed A soft kinetic data structure for lesion border detection
title_short A soft kinetic data structure for lesion border detection
title_sort soft kinetic data structure for lesion border detection
topic Ismb 2010 Conference Proceedings July 11 to July 13, 2010, Boston, Ma, Usa
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881363/
https://www.ncbi.nlm.nih.gov/pubmed/20529909
http://dx.doi.org/10.1093/bioinformatics/btq178
work_keys_str_mv AT kockarasinan asoftkineticdatastructureforlesionborderdetection
AT metemutlu asoftkineticdatastructureforlesionborderdetection
AT yipvincent asoftkineticdatastructureforlesionborderdetection
AT leebrendan asoftkineticdatastructureforlesionborderdetection
AT aydinkemal asoftkineticdatastructureforlesionborderdetection
AT kockarasinan softkineticdatastructureforlesionborderdetection
AT metemutlu softkineticdatastructureforlesionborderdetection
AT yipvincent softkineticdatastructureforlesionborderdetection
AT leebrendan softkineticdatastructureforlesionborderdetection
AT aydinkemal softkineticdatastructureforlesionborderdetection