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Combining classifiers for robust PICO element detection

BACKGROUND: Formulating a clinical information need in terms of the four atomic parts which are Population/Problem, Intervention, Comparison and Outcome (known as PICO elements) facilitates searching for a precise answer within a large medical citation database. However, using PICO defined items in...

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Autores principales: Boudin, Florian, Nie, Jian-Yun, Bartlett, Joan C, Grad, Roland, Pluye, Pierre, Dawes, Martin
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2891622/
https://www.ncbi.nlm.nih.gov/pubmed/20470429
http://dx.doi.org/10.1186/1472-6947-10-29
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author Boudin, Florian
Nie, Jian-Yun
Bartlett, Joan C
Grad, Roland
Pluye, Pierre
Dawes, Martin
author_facet Boudin, Florian
Nie, Jian-Yun
Bartlett, Joan C
Grad, Roland
Pluye, Pierre
Dawes, Martin
author_sort Boudin, Florian
collection PubMed
description BACKGROUND: Formulating a clinical information need in terms of the four atomic parts which are Population/Problem, Intervention, Comparison and Outcome (known as PICO elements) facilitates searching for a precise answer within a large medical citation database. However, using PICO defined items in the information retrieval process requires a search engine to be able to detect and index PICO elements in the collection in order for the system to retrieve relevant documents. METHODS: In this study, we tested multiple supervised classification algorithms and their combinations for detecting PICO elements within medical abstracts. Using the structural descriptors that are embedded in some medical abstracts, we have automatically gathered large training/testing data sets for each PICO element. RESULTS: Combining multiple classifiers using a weighted linear combination of their prediction scores achieves promising results with an f-measure score of 86.3% for P, 67% for I and 56.6% for O. CONCLUSIONS: Our experiments on the identification of PICO elements showed that the task is very challenging. Nevertheless, the performance achieved by our identification method is competitive with previously published results and shows that this task can be achieved with a high accuracy for the P element but lower ones for I and O elements.
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spelling pubmed-28916222010-06-25 Combining classifiers for robust PICO element detection Boudin, Florian Nie, Jian-Yun Bartlett, Joan C Grad, Roland Pluye, Pierre Dawes, Martin BMC Med Inform Decis Mak Research Article BACKGROUND: Formulating a clinical information need in terms of the four atomic parts which are Population/Problem, Intervention, Comparison and Outcome (known as PICO elements) facilitates searching for a precise answer within a large medical citation database. However, using PICO defined items in the information retrieval process requires a search engine to be able to detect and index PICO elements in the collection in order for the system to retrieve relevant documents. METHODS: In this study, we tested multiple supervised classification algorithms and their combinations for detecting PICO elements within medical abstracts. Using the structural descriptors that are embedded in some medical abstracts, we have automatically gathered large training/testing data sets for each PICO element. RESULTS: Combining multiple classifiers using a weighted linear combination of their prediction scores achieves promising results with an f-measure score of 86.3% for P, 67% for I and 56.6% for O. CONCLUSIONS: Our experiments on the identification of PICO elements showed that the task is very challenging. Nevertheless, the performance achieved by our identification method is competitive with previously published results and shows that this task can be achieved with a high accuracy for the P element but lower ones for I and O elements. BioMed Central 2010-05-15 /pmc/articles/PMC2891622/ /pubmed/20470429 http://dx.doi.org/10.1186/1472-6947-10-29 Text en Copyright ©2010 Boudin et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Boudin, Florian
Nie, Jian-Yun
Bartlett, Joan C
Grad, Roland
Pluye, Pierre
Dawes, Martin
Combining classifiers for robust PICO element detection
title Combining classifiers for robust PICO element detection
title_full Combining classifiers for robust PICO element detection
title_fullStr Combining classifiers for robust PICO element detection
title_full_unstemmed Combining classifiers for robust PICO element detection
title_short Combining classifiers for robust PICO element detection
title_sort combining classifiers for robust pico element detection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2891622/
https://www.ncbi.nlm.nih.gov/pubmed/20470429
http://dx.doi.org/10.1186/1472-6947-10-29
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