Cargando…

SEURAT: Visual analytics for the integrated analysis of microarray data

BACKGROUND: In translational cancer research, gene expression data is collected together with clinical data and genomic data arising from other chip based high throughput technologies. Software tools for the joint analysis of such high dimensional data sets together with clinical data are required....

Descripción completa

Detalles Bibliográficos
Autores principales:	Gribov, Alexander, Sill, Martin, Lück, Sonja, Rücker, Frank, Döhner, Konstanze, Bullinger, Lars, Benner, Axel, Unwin, Antony
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2893446/ https://www.ncbi.nlm.nih.gov/pubmed/20525257 http://dx.doi.org/10.1186/1755-8794-3-21

Ejemplares similares

Asc-Seurat: analytical single-cell Seurat-based web application
por: Pereira, W. J., et al.
Publicado: (2021)

Seurat /
por: Tilston, Richard
Publicado: (1991)

Death of Seurat
por: Vora, Setu K.
Publicado: (2005)

Functional Classification of TP53 Mutations in Acute Myeloid Leukemia
por: Dutta, Sayantanee, et al.
Publicado: (2020)

Interfacing Seurat with the R tidy universe
por: Mangiola, Stefano, et al.
Publicado: (2021)

Visual analytics in cheminformatics: user-supervised descriptor selection for QSAR methods
por: Martínez, María Jimena, et al.
Publicado: (2015)

Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization
por: Zhang, Ming, et al.
Publicado: (2010)

Seurat Spleen: A Pathognomonic Sign in Angiography
por: Newcomer, Jack B, et al.
Publicado: (2021)

Visualization and analysis of microarray and gene ontology data with treemaps
por: Baehrecke, Eric H, et al.
Publicado: (2004)

Visualization-based discovery and analysis of genomic aberrations in microarray data
por: Myers, Chad L, et al.
Publicado: (2005)

EXPANDER – an integrative program suite for microarray data analysis
por: Shamir, Ron, et al.
Publicado: (2005)

GeneXplorer: an interactive web application for microarray data visualization and analysis
por: Rees, Christian A, et al.
Publicado: (2004)

Hawkeye: an interactive visual analytics tool for genome assemblies
por: Schatz, Michael C, et al.
Publicado: (2007)

VIGLA-M: visual gene expression data analytics
por: Navas-Delgado, Ismael, et al.
Publicado: (2019)

Mayday - integrative analytics for expression data
por: Battke, Florian, et al.
Publicado: (2010)

DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data
por: Watson, Michael, et al.
Publicado: (2007)

Explorative visual analytics on interval-based genomic data and their metadata
por: Jalili, Vahid, et al.
Publicado: (2017)

TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays
por: Kim, Chulyun, et al.
Publicado: (2007)

GSVA: gene set variation analysis for microarray and RNA-Seq data
por: Hänzelmann, Sonja, et al.
Publicado: (2013)

Scaffold Hunter: a comprehensive visual analytics framework for drug discovery
por: Schäfer, Till, et al.
Publicado: (2017)

Complete Genome Sequence of Enterotoxigenic Escherichia coli Siphophage Seurat
por: Doan, Dung P., et al.
Publicado: (2015)

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB
por: Chatziioannou, Aristotelis, et al.
Publicado: (2009)

EMMA 2 – A MAGE-compliant system for the collaborative analysis and integration of microarray data
por: Dondrup, Michael, et al.
Publicado: (2009)

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses
por: van Wieringen, Wessel N, et al.
Publicado: (2012)

Novel procedure for generating continuous flash suppression: Seurat meets Mondrian
por: Cha, Oakyoon, et al.
Publicado: (2019)

s ·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data
por: Klemm, Paul, et al.
Publicado: (2019)

Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
por: Koonchanok, Ratanond, et al.
Publicado: (2021)

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data
por: Andreatta, Massimo, et al.
Publicado: (2020)

Integrated functional visualization of eukaryotic genomes
por: Ghai, Rohit, et al.
Publicado: (2006)

Genome Expression Pathway Analysis Tool – Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context
por: Weniger, Markus, et al.
Publicado: (2007)

Predictive value of DNA methylation patterns in AML patients treated with an azacytidine containing induction regimen
por: Schmutz, Maximilian, et al.
Publicado: (2023)

animalcules: interactive microbiome analytics and visualization in R
por: Zhao, Yue, et al.
Publicado: (2021)

DAVID: Database for Annotation, Visualization, and Integrated Discovery
por: Dennis, Glynn, et al.
Publicado: (2003)

Coral: an integrated suite of visualizations for comparing clusterings
por: Filippova, Darya, et al.
Publicado: (2012)

EPIPOI: A user-friendly analytical tool for the extraction and visualization of temporal parameters from epidemiological time series
por: Alonso, Wladimir J, et al.
Publicado: (2012)

Analytics and visualization tools to characterize single-cell stochasticity using bacterial single-cell movie cytometry data
por: Balomenos, Athanasios D., et al.
Publicado: (2021)

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research
por: Glez-Peña, Daniel, et al.
Publicado: (2009)

MPDA: Microarray pooled DNA analyzer
por: Yang, Hsin-Chou, et al.
Publicado: (2008)

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
por: Menten, Björn, et al.
Publicado: (2005)

Integrated network reconstruction, visualization and analysis using YANAsquare
por: Schwarz, Roland, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_20349079kgpgfharfqbq0cp1l3