Cargando…

myExperiment: a repository and social network for the sharing of bioinformatics workflows

myExperiment (http://www.myexperiment.org) is an online research environment that supports the social sharing of bioinformatics workflows. These workflows are procedures consisting of a series of computational tasks using web services, which may be performed on data from its retrieval, integration a...

Descripción completa

Detalles Bibliográficos
Autores principales: Goble, Carole A., Bhagat, Jiten, Aleksejevs, Sergejs, Cruickshank, Don, Michaelides, Danius, Newman, David, Borkum, Mark, Bechhofer, Sean, Roos, Marco, Li, Peter, De Roure, David
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896080/
https://www.ncbi.nlm.nih.gov/pubmed/20501605
http://dx.doi.org/10.1093/nar/gkq429
_version_ 1782183304981643264
author Goble, Carole A.
Bhagat, Jiten
Aleksejevs, Sergejs
Cruickshank, Don
Michaelides, Danius
Newman, David
Borkum, Mark
Bechhofer, Sean
Roos, Marco
Li, Peter
De Roure, David
author_facet Goble, Carole A.
Bhagat, Jiten
Aleksejevs, Sergejs
Cruickshank, Don
Michaelides, Danius
Newman, David
Borkum, Mark
Bechhofer, Sean
Roos, Marco
Li, Peter
De Roure, David
author_sort Goble, Carole A.
collection PubMed
description myExperiment (http://www.myexperiment.org) is an online research environment that supports the social sharing of bioinformatics workflows. These workflows are procedures consisting of a series of computational tasks using web services, which may be performed on data from its retrieval, integration and analysis, to the visualization of the results. As a public repository of workflows, myExperiment allows anybody to discover those that are relevant to their research, which can then be reused and repurposed to their specific requirements. Conversely, developers can submit their workflows to myExperiment and enable them to be shared in a secure manner. Since its release in 2007, myExperiment currently has over 3500 registered users and contains more than 1000 workflows. The social aspect to the sharing of these workflows is facilitated by registered users forming virtual communities bound together by a common interest or research project. Contributors of workflows can build their reputation within these communities by receiving feedback and credit from individuals who reuse their work. Further documentation about myExperiment including its REST web service is available from http://wiki.myexperiment.org. Feedback and requests for support can be sent to bugs@myexperiment.org.
format Text
id pubmed-2896080
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-28960802010-07-02 myExperiment: a repository and social network for the sharing of bioinformatics workflows Goble, Carole A. Bhagat, Jiten Aleksejevs, Sergejs Cruickshank, Don Michaelides, Danius Newman, David Borkum, Mark Bechhofer, Sean Roos, Marco Li, Peter De Roure, David Nucleic Acids Res Articles myExperiment (http://www.myexperiment.org) is an online research environment that supports the social sharing of bioinformatics workflows. These workflows are procedures consisting of a series of computational tasks using web services, which may be performed on data from its retrieval, integration and analysis, to the visualization of the results. As a public repository of workflows, myExperiment allows anybody to discover those that are relevant to their research, which can then be reused and repurposed to their specific requirements. Conversely, developers can submit their workflows to myExperiment and enable them to be shared in a secure manner. Since its release in 2007, myExperiment currently has over 3500 registered users and contains more than 1000 workflows. The social aspect to the sharing of these workflows is facilitated by registered users forming virtual communities bound together by a common interest or research project. Contributors of workflows can build their reputation within these communities by receiving feedback and credit from individuals who reuse their work. Further documentation about myExperiment including its REST web service is available from http://wiki.myexperiment.org. Feedback and requests for support can be sent to bugs@myexperiment.org. Oxford University Press 2010-07-01 2010-05-25 /pmc/articles/PMC2896080/ /pubmed/20501605 http://dx.doi.org/10.1093/nar/gkq429 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Goble, Carole A.
Bhagat, Jiten
Aleksejevs, Sergejs
Cruickshank, Don
Michaelides, Danius
Newman, David
Borkum, Mark
Bechhofer, Sean
Roos, Marco
Li, Peter
De Roure, David
myExperiment: a repository and social network for the sharing of bioinformatics workflows
title myExperiment: a repository and social network for the sharing of bioinformatics workflows
title_full myExperiment: a repository and social network for the sharing of bioinformatics workflows
title_fullStr myExperiment: a repository and social network for the sharing of bioinformatics workflows
title_full_unstemmed myExperiment: a repository and social network for the sharing of bioinformatics workflows
title_short myExperiment: a repository and social network for the sharing of bioinformatics workflows
title_sort myexperiment: a repository and social network for the sharing of bioinformatics workflows
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896080/
https://www.ncbi.nlm.nih.gov/pubmed/20501605
http://dx.doi.org/10.1093/nar/gkq429
work_keys_str_mv AT goblecarolea myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT bhagatjiten myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT aleksejevssergejs myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT cruickshankdon myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT michaelidesdanius myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT newmandavid myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT borkummark myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT bechhofersean myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT roosmarco myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT lipeter myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows
AT derouredavid myexperimentarepositoryandsocialnetworkforthesharingofbioinformaticsworkflows