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YLoc—an interpretable web server for predicting subcellular localization
Predicting subcellular localization has become a valuable alternative to time-consuming experimental methods. Major drawbacks of many of these predictors is their lack of interpretability and the fact that they do not provide an estimate of the confidence of an individual prediction. We present YLoc...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
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Oxford University Press
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896088/ https://www.ncbi.nlm.nih.gov/pubmed/20507917 http://dx.doi.org/10.1093/nar/gkq477 |
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author | Briesemeister, Sebastian Rahnenführer, Jörg Kohlbacher, Oliver |
author_facet | Briesemeister, Sebastian Rahnenführer, Jörg Kohlbacher, Oliver |
author_sort | Briesemeister, Sebastian |
collection | PubMed |
description | Predicting subcellular localization has become a valuable alternative to time-consuming experimental methods. Major drawbacks of many of these predictors is their lack of interpretability and the fact that they do not provide an estimate of the confidence of an individual prediction. We present YLoc, an interpretable web server for predicting subcellular localization. YLoc uses natural language to explain why a prediction was made and which biological property of the protein was mainly responsible for it. In addition, YLoc estimates the reliability of its own predictions. YLoc can, thus, assist in understanding protein localization and in location engineering of proteins. The YLoc web server is available online at www.multiloc.org/YLoc. |
format | Text |
id | pubmed-2896088 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-28960882010-07-02 YLoc—an interpretable web server for predicting subcellular localization Briesemeister, Sebastian Rahnenführer, Jörg Kohlbacher, Oliver Nucleic Acids Res Articles Predicting subcellular localization has become a valuable alternative to time-consuming experimental methods. Major drawbacks of many of these predictors is their lack of interpretability and the fact that they do not provide an estimate of the confidence of an individual prediction. We present YLoc, an interpretable web server for predicting subcellular localization. YLoc uses natural language to explain why a prediction was made and which biological property of the protein was mainly responsible for it. In addition, YLoc estimates the reliability of its own predictions. YLoc can, thus, assist in understanding protein localization and in location engineering of proteins. The YLoc web server is available online at www.multiloc.org/YLoc. Oxford University Press 2010-07-01 2010-05-27 /pmc/articles/PMC2896088/ /pubmed/20507917 http://dx.doi.org/10.1093/nar/gkq477 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Briesemeister, Sebastian Rahnenführer, Jörg Kohlbacher, Oliver YLoc—an interpretable web server for predicting subcellular localization |
title | YLoc—an interpretable web server for predicting subcellular localization |
title_full | YLoc—an interpretable web server for predicting subcellular localization |
title_fullStr | YLoc—an interpretable web server for predicting subcellular localization |
title_full_unstemmed | YLoc—an interpretable web server for predicting subcellular localization |
title_short | YLoc—an interpretable web server for predicting subcellular localization |
title_sort | yloc—an interpretable web server for predicting subcellular localization |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896088/ https://www.ncbi.nlm.nih.gov/pubmed/20507917 http://dx.doi.org/10.1093/nar/gkq477 |
work_keys_str_mv | AT briesemeistersebastian ylocaninterpretablewebserverforpredictingsubcellularlocalization AT rahnenfuhrerjorg ylocaninterpretablewebserverforpredictingsubcellularlocalization AT kohlbacheroliver ylocaninterpretablewebserverforpredictingsubcellularlocalization |