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G-language genome analysis environment with REST and SOAP web service interfaces

G-language genome analysis environment (G-language GAE) contains more than 100 programs that focus on the analysis of bacterial genomes, including programs for the identification of binding sites by means of information theory, analysis of nucleotide composition bias and the distribution of particul...

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Detalles Bibliográficos
Autores principales: Arakawa, Kazuharu, Kido, Nobuhiro, Oshita, Kazuki, Tomita, Masaru
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896103/
https://www.ncbi.nlm.nih.gov/pubmed/20439313
http://dx.doi.org/10.1093/nar/gkq315
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author Arakawa, Kazuharu
Kido, Nobuhiro
Oshita, Kazuki
Tomita, Masaru
author_facet Arakawa, Kazuharu
Kido, Nobuhiro
Oshita, Kazuki
Tomita, Masaru
author_sort Arakawa, Kazuharu
collection PubMed
description G-language genome analysis environment (G-language GAE) contains more than 100 programs that focus on the analysis of bacterial genomes, including programs for the identification of binding sites by means of information theory, analysis of nucleotide composition bias and the distribution of particular oligonucleotides, calculation of codon bias and prediction of expression levels, and visualization of genomic information. We have provided a collection of web services for these programs by utilizing REST and SOAP technologies. The REST interface, available at http://rest.g-language.org/, provides access to all 145 functions of the G-language GAE. These functions can be accessed from other online resources. All analysis functions are represented by unique universal resource identifiers. Users can access the functions directly via the corresponding universe resource locators (URLs), and biological web sites can readily embed the functions by simply linking to these URLs. The SOAP services, available at http://www.g-language.org/wiki/soap/, provide language-independent programmatic access to 77 analysis programs. The SOAP service Web Services Definition Language file can be readily loaded into graphical clients such as the Taverna workbench to integrate the programs with other services and workflows.
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spelling pubmed-28961032010-07-02 G-language genome analysis environment with REST and SOAP web service interfaces Arakawa, Kazuharu Kido, Nobuhiro Oshita, Kazuki Tomita, Masaru Nucleic Acids Res Web Services G-language genome analysis environment (G-language GAE) contains more than 100 programs that focus on the analysis of bacterial genomes, including programs for the identification of binding sites by means of information theory, analysis of nucleotide composition bias and the distribution of particular oligonucleotides, calculation of codon bias and prediction of expression levels, and visualization of genomic information. We have provided a collection of web services for these programs by utilizing REST and SOAP technologies. The REST interface, available at http://rest.g-language.org/, provides access to all 145 functions of the G-language GAE. These functions can be accessed from other online resources. All analysis functions are represented by unique universal resource identifiers. Users can access the functions directly via the corresponding universe resource locators (URLs), and biological web sites can readily embed the functions by simply linking to these URLs. The SOAP services, available at http://www.g-language.org/wiki/soap/, provide language-independent programmatic access to 77 analysis programs. The SOAP service Web Services Definition Language file can be readily loaded into graphical clients such as the Taverna workbench to integrate the programs with other services and workflows. Oxford University Press 2010-07-01 2010-05-03 /pmc/articles/PMC2896103/ /pubmed/20439313 http://dx.doi.org/10.1093/nar/gkq315 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Services
Arakawa, Kazuharu
Kido, Nobuhiro
Oshita, Kazuki
Tomita, Masaru
G-language genome analysis environment with REST and SOAP web service interfaces
title G-language genome analysis environment with REST and SOAP web service interfaces
title_full G-language genome analysis environment with REST and SOAP web service interfaces
title_fullStr G-language genome analysis environment with REST and SOAP web service interfaces
title_full_unstemmed G-language genome analysis environment with REST and SOAP web service interfaces
title_short G-language genome analysis environment with REST and SOAP web service interfaces
title_sort g-language genome analysis environment with rest and soap web service interfaces
topic Web Services
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896103/
https://www.ncbi.nlm.nih.gov/pubmed/20439313
http://dx.doi.org/10.1093/nar/gkq315
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