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FoXS: a web server for rapid computation and fitting of SAXS profiles

Small angle X-ray scattering (SAXS) is an increasingly common technique for low-resolution structural characterization of molecules in solution. SAXS experiment determines the scattering intensity of a molecule as a function of spatial frequency, termed SAXS profile. SAXS profiles can contribute to...

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Detalles Bibliográficos
Autores principales: Schneidman-Duhovny, Dina, Hammel, Michal, Sali, Andrej
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896111/
https://www.ncbi.nlm.nih.gov/pubmed/20507903
http://dx.doi.org/10.1093/nar/gkq461
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author Schneidman-Duhovny, Dina
Hammel, Michal
Sali, Andrej
author_facet Schneidman-Duhovny, Dina
Hammel, Michal
Sali, Andrej
author_sort Schneidman-Duhovny, Dina
collection PubMed
description Small angle X-ray scattering (SAXS) is an increasingly common technique for low-resolution structural characterization of molecules in solution. SAXS experiment determines the scattering intensity of a molecule as a function of spatial frequency, termed SAXS profile. SAXS profiles can contribute to many applications, such as comparing a conformation in solution with the corresponding X-ray structure, modeling a flexible or multi-modular protein, and assembling a macromolecular complex from its subunits. These applications require rapid computation of a SAXS profile from a molecular structure. FoXS (Fast X-Ray Scattering) is a rapid method for computing a SAXS profile of a given structure and for matching of the computed and experimental profiles. Here, we describe the interface and capabilities of the FoXS web server (http://salilab.org/foxs).
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spelling pubmed-28961112010-07-02 FoXS: a web server for rapid computation and fitting of SAXS profiles Schneidman-Duhovny, Dina Hammel, Michal Sali, Andrej Nucleic Acids Res Articles Small angle X-ray scattering (SAXS) is an increasingly common technique for low-resolution structural characterization of molecules in solution. SAXS experiment determines the scattering intensity of a molecule as a function of spatial frequency, termed SAXS profile. SAXS profiles can contribute to many applications, such as comparing a conformation in solution with the corresponding X-ray structure, modeling a flexible or multi-modular protein, and assembling a macromolecular complex from its subunits. These applications require rapid computation of a SAXS profile from a molecular structure. FoXS (Fast X-Ray Scattering) is a rapid method for computing a SAXS profile of a given structure and for matching of the computed and experimental profiles. Here, we describe the interface and capabilities of the FoXS web server (http://salilab.org/foxs). Oxford University Press 2010-07-01 2010-05-27 /pmc/articles/PMC2896111/ /pubmed/20507903 http://dx.doi.org/10.1093/nar/gkq461 Text en Published by Oxford University Press (2010). http://creativecommons.org/licenses/by-nc/2.5/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Schneidman-Duhovny, Dina
Hammel, Michal
Sali, Andrej
FoXS: a web server for rapid computation and fitting of SAXS profiles
title FoXS: a web server for rapid computation and fitting of SAXS profiles
title_full FoXS: a web server for rapid computation and fitting of SAXS profiles
title_fullStr FoXS: a web server for rapid computation and fitting of SAXS profiles
title_full_unstemmed FoXS: a web server for rapid computation and fitting of SAXS profiles
title_short FoXS: a web server for rapid computation and fitting of SAXS profiles
title_sort foxs: a web server for rapid computation and fitting of saxs profiles
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896111/
https://www.ncbi.nlm.nih.gov/pubmed/20507903
http://dx.doi.org/10.1093/nar/gkq461
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