DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS

We introduce web interfaces for two recent extensions of the multiple-alignment program DIALIGN. DIALIGN-TX combines the greedy heuristic previously used in DIALIGN with a more traditional ‘progressive’ approach for improved performance on locally and globally related sequence sets. In addition, we...

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Detalles Bibliográficos
Autores principales: Subramanian, Amarendran R., Hiran, Suvrat, Steinkamp, Rasmus, Meinicke, Peter, Corel, Eduardo, Morgenstern, Burkhard
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896137/
https://www.ncbi.nlm.nih.gov/pubmed/20497995
http://dx.doi.org/10.1093/nar/gkq442
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author Subramanian, Amarendran R.
Hiran, Suvrat
Steinkamp, Rasmus
Meinicke, Peter
Corel, Eduardo
Morgenstern, Burkhard
author_facet Subramanian, Amarendran R.
Hiran, Suvrat
Steinkamp, Rasmus
Meinicke, Peter
Corel, Eduardo
Morgenstern, Burkhard
author_sort Subramanian, Amarendran R.
collection PubMed
description We introduce web interfaces for two recent extensions of the multiple-alignment program DIALIGN. DIALIGN-TX combines the greedy heuristic previously used in DIALIGN with a more traditional ‘progressive’ approach for improved performance on locally and globally related sequence sets. In addition, we offer a version of DIALIGN that uses predicted protein secondary structures together with primary sequence information to construct multiple protein alignments. Both programs are available through ‘Göttingen Bioinformatics Compute Server’ (GOBICS).
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spelling pubmed-28961372010-07-02 DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS Subramanian, Amarendran R. Hiran, Suvrat Steinkamp, Rasmus Meinicke, Peter Corel, Eduardo Morgenstern, Burkhard Nucleic Acids Res Articles We introduce web interfaces for two recent extensions of the multiple-alignment program DIALIGN. DIALIGN-TX combines the greedy heuristic previously used in DIALIGN with a more traditional ‘progressive’ approach for improved performance on locally and globally related sequence sets. In addition, we offer a version of DIALIGN that uses predicted protein secondary structures together with primary sequence information to construct multiple protein alignments. Both programs are available through ‘Göttingen Bioinformatics Compute Server’ (GOBICS). Oxford University Press 2010-07-01 2010-05-23 /pmc/articles/PMC2896137/ /pubmed/20497995 http://dx.doi.org/10.1093/nar/gkq442 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Subramanian, Amarendran R.
Hiran, Suvrat
Steinkamp, Rasmus
Meinicke, Peter
Corel, Eduardo
Morgenstern, Burkhard
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
title DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
title_full DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
title_fullStr DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
title_full_unstemmed DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
title_short DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
title_sort dialign-tx and multiple protein alignment using secondary structure information at gobics
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896137/
https://www.ncbi.nlm.nih.gov/pubmed/20497995
http://dx.doi.org/10.1093/nar/gkq442
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