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IBWS: IST Bioinformatics Web Services

The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than...

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Detalles Bibliográficos
Autores principales: Zappa, Achille, Miele, Mariangela, Romano, Paolo
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896171/
https://www.ncbi.nlm.nih.gov/pubmed/20484374
http://dx.doi.org/10.1093/nar/gkq416
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author Zappa, Achille
Miele, Mariangela
Romano, Paolo
author_facet Zappa, Achille
Miele, Mariangela
Romano, Paolo
author_sort Zappa, Achille
collection PubMed
description The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130 000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. ‘SRS by WS (SWS)’, a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the ‘IST Bioinformatics Web Services (IBWS)’. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at http://bioinformatics.istge.it/ibws/. WSDL definitions can also be retrieved directly at http://bioinformatics.istge.it:8080/axis/services.
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spelling pubmed-28961712010-07-02 IBWS: IST Bioinformatics Web Services Zappa, Achille Miele, Mariangela Romano, Paolo Nucleic Acids Res Web Services The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130 000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. ‘SRS by WS (SWS)’, a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the ‘IST Bioinformatics Web Services (IBWS)’. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at http://bioinformatics.istge.it/ibws/. WSDL definitions can also be retrieved directly at http://bioinformatics.istge.it:8080/axis/services. Oxford University Press 2010-07-01 2010-05-19 /pmc/articles/PMC2896171/ /pubmed/20484374 http://dx.doi.org/10.1093/nar/gkq416 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Services
Zappa, Achille
Miele, Mariangela
Romano, Paolo
IBWS: IST Bioinformatics Web Services
title IBWS: IST Bioinformatics Web Services
title_full IBWS: IST Bioinformatics Web Services
title_fullStr IBWS: IST Bioinformatics Web Services
title_full_unstemmed IBWS: IST Bioinformatics Web Services
title_short IBWS: IST Bioinformatics Web Services
title_sort ibws: ist bioinformatics web services
topic Web Services
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896171/
https://www.ncbi.nlm.nih.gov/pubmed/20484374
http://dx.doi.org/10.1093/nar/gkq416
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