Cargando…

MOWServ: a web client for integration of bioinformatic resources

The productivity of any scientist is affected by cumbersome, tedious and time-consuming tasks that try to make the heterogeneous web services compatible so that they can be useful in their research. MOWServ, the bioinformatic platform offered by the Spanish National Institute of Bioinformatics, was...

Descripción completa

Detalles Bibliográficos
Autores principales: Ramírez, Sergio, Muñoz-Mérida, Antonio, Karlsson, Johan, García, Maximiliano, Pérez-Pulido, Antonio J., Claros, M. Gonzalo, Trelles, Oswaldo
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896175/
https://www.ncbi.nlm.nih.gov/pubmed/20525794
http://dx.doi.org/10.1093/nar/gkq497
_version_ 1782183328041926656
author Ramírez, Sergio
Muñoz-Mérida, Antonio
Karlsson, Johan
García, Maximiliano
Pérez-Pulido, Antonio J.
Claros, M. Gonzalo
Trelles, Oswaldo
author_facet Ramírez, Sergio
Muñoz-Mérida, Antonio
Karlsson, Johan
García, Maximiliano
Pérez-Pulido, Antonio J.
Claros, M. Gonzalo
Trelles, Oswaldo
author_sort Ramírez, Sergio
collection PubMed
description The productivity of any scientist is affected by cumbersome, tedious and time-consuming tasks that try to make the heterogeneous web services compatible so that they can be useful in their research. MOWServ, the bioinformatic platform offered by the Spanish National Institute of Bioinformatics, was released to provide integrated access to databases and analytical tools. Since its release, the number of available services has grown dramatically, and it has become one of the main contributors of registered services in the EMBRACE Biocatalogue. The ontology that enables most of the web-service compatibility has been curated, improved and extended. The service discovery has been greatly enhanced by Magallanes software and biodataSF. User data are securely stored on the main server by an authentication protocol that enables the monitoring of current or already-finished user’s tasks, as well as the pipelining of successive data processing services. The BioMoby standard has been greatly extended with the new features included in the MOWServ, such as management of additional information (metadata such as extended descriptions, keywords and datafile examples), a qualified registry, error handling, asynchronous services and service replication. All of them have increased the MOWServ service quality, usability and robustness. MOWServ is available at http://www.inab.org/MOWServ/ and has a mirror at http://www.bitlab-es.com/MOWServ/.
format Text
id pubmed-2896175
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-28961752010-07-02 MOWServ: a web client for integration of bioinformatic resources Ramírez, Sergio Muñoz-Mérida, Antonio Karlsson, Johan García, Maximiliano Pérez-Pulido, Antonio J. Claros, M. Gonzalo Trelles, Oswaldo Nucleic Acids Res Articles The productivity of any scientist is affected by cumbersome, tedious and time-consuming tasks that try to make the heterogeneous web services compatible so that they can be useful in their research. MOWServ, the bioinformatic platform offered by the Spanish National Institute of Bioinformatics, was released to provide integrated access to databases and analytical tools. Since its release, the number of available services has grown dramatically, and it has become one of the main contributors of registered services in the EMBRACE Biocatalogue. The ontology that enables most of the web-service compatibility has been curated, improved and extended. The service discovery has been greatly enhanced by Magallanes software and biodataSF. User data are securely stored on the main server by an authentication protocol that enables the monitoring of current or already-finished user’s tasks, as well as the pipelining of successive data processing services. The BioMoby standard has been greatly extended with the new features included in the MOWServ, such as management of additional information (metadata such as extended descriptions, keywords and datafile examples), a qualified registry, error handling, asynchronous services and service replication. All of them have increased the MOWServ service quality, usability and robustness. MOWServ is available at http://www.inab.org/MOWServ/ and has a mirror at http://www.bitlab-es.com/MOWServ/. Oxford University Press 2010-07-01 2010-06-04 /pmc/articles/PMC2896175/ /pubmed/20525794 http://dx.doi.org/10.1093/nar/gkq497 Text en © The Author(s) 2010. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Ramírez, Sergio
Muñoz-Mérida, Antonio
Karlsson, Johan
García, Maximiliano
Pérez-Pulido, Antonio J.
Claros, M. Gonzalo
Trelles, Oswaldo
MOWServ: a web client for integration of bioinformatic resources
title MOWServ: a web client for integration of bioinformatic resources
title_full MOWServ: a web client for integration of bioinformatic resources
title_fullStr MOWServ: a web client for integration of bioinformatic resources
title_full_unstemmed MOWServ: a web client for integration of bioinformatic resources
title_short MOWServ: a web client for integration of bioinformatic resources
title_sort mowserv: a web client for integration of bioinformatic resources
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896175/
https://www.ncbi.nlm.nih.gov/pubmed/20525794
http://dx.doi.org/10.1093/nar/gkq497
work_keys_str_mv AT ramirezsergio mowservawebclientforintegrationofbioinformaticresources
AT munozmeridaantonio mowservawebclientforintegrationofbioinformaticresources
AT karlssonjohan mowservawebclientforintegrationofbioinformaticresources
AT garciamaximiliano mowservawebclientforintegrationofbioinformaticresources
AT perezpulidoantonioj mowservawebclientforintegrationofbioinformaticresources
AT clarosmgonzalo mowservawebclientforintegrationofbioinformaticresources
AT trellesoswaldo mowservawebclientforintegrationofbioinformaticresources