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Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator

A recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely...

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Detalles Bibliográficos
Autores principales: Sevim, Volkan, Gong, Xinwei, Socolar, Joshua E. S.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2900291/
https://www.ncbi.nlm.nih.gov/pubmed/20628620
http://dx.doi.org/10.1371/journal.pcbi.1000842
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author Sevim, Volkan
Gong, Xinwei
Socolar, Joshua E. S.
author_facet Sevim, Volkan
Gong, Xinwei
Socolar, Joshua E. S.
author_sort Sevim, Volkan
collection PubMed
description A recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely on a constitutive signal or positive auto-regulation, but rather to operate through stable transmission of a pulse on a slow positive feedback loop that determines its period. We construct a continuous-time Boolean model of this network, which permits the modeling of noise through small fluctuations in the timing of events, and show that it can sustain stable oscillations. Analysis of simpler network models shows how a few building blocks can be arranged to provide stability against fluctuations. Our findings suggest that the transcriptional oscillator in yeast belongs to a new class of biological oscillators.
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spelling pubmed-29002912010-07-13 Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator Sevim, Volkan Gong, Xinwei Socolar, Joshua E. S. PLoS Comput Biol Research Article A recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely on a constitutive signal or positive auto-regulation, but rather to operate through stable transmission of a pulse on a slow positive feedback loop that determines its period. We construct a continuous-time Boolean model of this network, which permits the modeling of noise through small fluctuations in the timing of events, and show that it can sustain stable oscillations. Analysis of simpler network models shows how a few building blocks can be arranged to provide stability against fluctuations. Our findings suggest that the transcriptional oscillator in yeast belongs to a new class of biological oscillators. Public Library of Science 2010-07-08 /pmc/articles/PMC2900291/ /pubmed/20628620 http://dx.doi.org/10.1371/journal.pcbi.1000842 Text en Sevim et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Sevim, Volkan
Gong, Xinwei
Socolar, Joshua E. S.
Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator
title Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator
title_full Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator
title_fullStr Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator
title_full_unstemmed Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator
title_short Reliability of Transcriptional Cycles and the Yeast Cell-Cycle Oscillator
title_sort reliability of transcriptional cycles and the yeast cell-cycle oscillator
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2900291/
https://www.ncbi.nlm.nih.gov/pubmed/20628620
http://dx.doi.org/10.1371/journal.pcbi.1000842
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