CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

BACKGROUND: Due to its high sensitivity, the Smith-Waterman algorithm is widely used for biological database searches. Unfortunately, the quadratic time complexity of this algorithm makes it highly time-consuming. The exponential growth of biological databases further deteriorates the situation. To...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Yongchao, Schmidt, Bertil, Maskell, Douglas L
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Technical Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907862/
https://www.ncbi.nlm.nih.gov/pubmed/20370891
http://dx.doi.org/10.1186/1756-0500-3-93

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907862/
https://www.ncbi.nlm.nih.gov/pubmed/20370891
http://dx.doi.org/10.1186/1756-0500-3-93

Ejemplares similares