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CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

BACKGROUND: Due to its high sensitivity, the Smith-Waterman algorithm is widely used for biological database searches. Unfortunately, the quadratic time complexity of this algorithm makes it highly time-consuming. The exponential growth of biological databases further deteriorates the situation. To...

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Detalles Bibliográficos
Autores principales:	Liu, Yongchao, Schmidt, Bertil, Maskell, Douglas L
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Technical Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907862/ https://www.ncbi.nlm.nih.gov/pubmed/20370891 http://dx.doi.org/10.1186/1756-0500-3-93

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