Cargando…

PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms

BACKGROUND: Several tools have been developed to explore and search Gene Ontology (GO) databases allowing efficient GO enrichment analysis and GO tree visualization. Nevertheless, identification of highly specific GO-terms in complex data sets is relatively complicated and the display of GO term ass...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bruckskotten, Marc, Looso, Mario, Cemiĉ, Franz, Konzer, Anne, Hemberger, Jürgen, Krüger, Marcus, Braun, Thomas
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2910024/ https://www.ncbi.nlm.nih.gov/pubmed/20565932 http://dx.doi.org/10.1186/1471-2105-11-336

Ejemplares similares

Genome comparison using Gene Ontology (GO) with statistical testing
por: Cai, Zhaotao, et al.
Publicado: (2006)

Integrating gene expression and GO classification for PCA by preclustering
por: De Haan, Jorn R, et al.
Publicado: (2010)

GOTA: GO term annotation of biomedical literature
por: Lena, Pietro Di, et al.
Publicado: (2015)

Statistical integration of two omics datasets using GO2PLS
por: Gu, Zhujie, et al.
Publicado: (2021)

Proteomics of Galápagos Marine Iguanas Links Function of Femoral Gland Proteins to the Immune System
por: Tellkamp, Frederik, et al.
Publicado: (2020)

Improving automatic GO annotation with semantic similarity
por: Sarker, Bishnu, et al.
Publicado: (2022)

GONOME: measuring correlations between GO terms and genomic positions
por: Stanley, Stefan M, et al.
Publicado: (2006)

Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens
por: Bruckskotten, Marc, et al.
Publicado: (2012)

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration
por: Looso, Mario, et al.
Publicado: (2013)

Trial-Level Regressor Modulation for Functional Magnetic Resonance Imaging Designs Requiring Strict Periodicity of Stimulus Presentations: Illustrated Using a Go/No-Go Task
por: Motes, Michael A, et al.
Publicado: (2017)

Analysis of newly established EST databases reveals similarities between heart regeneration in newt and fish
por: Borchardt, Thilo, et al.
Publicado: (2010)

GO-based Functional Dissimilarity of Gene Sets
por: Díaz-Díaz, Norberto, et al.
Publicado: (2011)

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
por: Wagner, Florian
Publicado: (2015)

ResA(3): A Web Tool for Resampling Analysis of Arbitrary Annotations
por: Ruhs, Aaron, et al.
Publicado: (2013)

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data
por: Carvalho, Paulo C, et al.
Publicado: (2009)

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
por: Huang, Wen-Lin, et al.
Publicado: (2008)

Going viral? Linking the etiology of human prostate cancer to the PCA3 long noncoding RNA and oncogenic viruses
por: Teixeira, Andre A, et al.
Publicado: (2017)

Automated methods of predicting the function of biological sequences using GO and BLAST
por: Jones, Craig E, et al.
Publicado: (2005)

ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay
por: Preussner, Jens, et al.
Publicado: (2015)

A microarray analysis of gene expression patterns during early phases of newt lens regeneration
por: Sousounis, Konstantinos, et al.
Publicado: (2013)

Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics
por: Conesa, Ana, et al.
Publicado: (2008)

VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
por: Kestler, Hans A, et al.
Publicado: (2008)

NoGOA: predicting noisy GO annotations using evidences and sparse representation
por: Yu, Guoxian, et al.
Publicado: (2017)

Multivariate Analyses and Classification of Inertial Sensor Data to Identify Aging Effects on the Timed-Up-and-Go Test
por: Vervoort, Danique, et al.
Publicado: (2016)

Using multivariate decoding to go beyond contrastive analyses in consciousness research
por: Sandberg, Kristian, et al.
Publicado: (2014)

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses
por: Berghoff, Bork A., et al.
Publicado: (2013)

AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations
por: Defoin-Platel, Michael, et al.
Publicado: (2011)

Iterative pruning PCA improves resolution of highly structured populations
por: Intarapanich, Apichart, et al.
Publicado: (2009)

pcaReduce: hierarchical clustering of single cell transcriptional profiles
por: žurauskienė, Justina, et al.
Publicado: (2016)

Going Forward with Pokemon Go
por: Chong, Yvette, et al.
Publicado: (2018)

pcaGoPromoter - An R Package for Biological and Regulatory Interpretation of Principal Components in Genome-Wide Gene Expression Data
por: Hansen, Morten, et al.
Publicado: (2012)

Valuation of Go Stimuli or Devaluation of No-Go Stimuli? Evidence of an Increased Preference for Attended Go Stimuli Following a Go/No-Go Task
por: Inoue, Kazuya, et al.
Publicado: (2017)

IntelliGO: a new vector-based semantic similarity measure including annotation origin
por: Benabderrahmane, Sidahmed, et al.
Publicado: (2010)

Higgs Boson a-go-go
por: Williams, Chris
Publicado: (2006)

Going, going, gone: competitive decision-making in Dutch auctions
por: Bennett, Murray, et al.
Publicado: (2020)

STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation
por: Wittkop, Tobias, et al.
Publicado: (2013)

Comparative survey of go/no-go results to identify the inhibitory control ability change of Japanese children
por: Terasawa, Koji, et al.
Publicado: (2014)

Programación en Go /
por: Macías Lloret, Mario
Publicado: (2023)

Go for it!
por: Nunan, David
Publicado: (1999)

Going It
Publicado: (1861)

Cannot write session to /tmp/vufind_sessions/sess_45qaghghuhv6dsar138ogbf3p5