Cargando…

Efficiency clustering for low-density microarrays and its application to QPCR

BACKGROUND: Pathway-targeted or low-density arrays are used more and more frequently in biomedical research, particularly those arrays that are based on quantitative real-time PCR. Typical QPCR arrays contain 96-1024 primer pairs or probes, and they bring with it the promise of being able to reliabl...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lock, Eric F, Ziemiecke, Ryan, Marron, JS, Dittmer, Dirk P
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912893/ https://www.ncbi.nlm.nih.gov/pubmed/20646303 http://dx.doi.org/10.1186/1471-2105-11-386

Ejemplares similares

Selecting control genes for RT-QPCR using public microarray data
por: Popovici, Vlad, et al.
Publicado: (2009)

A novel approach to the clustering of microarray data via nonparametric density estimation
por: De Bin, Riccardo, et al.
Publicado: (2011)

Simple regression for correcting ΔC(t) bias in RT-qPCR low-density array data normalization
por: Cui, Xiangqin, et al.
Publicado: (2015)

Correlation test to assess low-level processing of high-density oligonucleotide microarray data
por: Ploner, Alexander, et al.
Publicado: (2005)

A common base method for analysis of qPCR data and the application of simple blocking in qPCR experiments
por: Ganger, Michael T., et al.
Publicado: (2017)

Low density DNA microarray for detection of most frequent TP53 missense point mutations
por: Rangel-López, Angélica, et al.
Publicado: (2005)

Visualization methods for statistical analysis of microarray clusters
por: Hibbs, Matthew A, et al.
Publicado: (2005)

A cell spot microarray method for production of high density siRNA transfection microarrays
por: Rantala, Juha K, et al.
Publicado: (2011)

Development of a microarray platform for FFPET profiling: application to the classification of human tumors
por: Duenwald, Sven, et al.
Publicado: (2009)

Differential analysis for high density tiling microarray data
por: Ghosh, Srinka, et al.
Publicado: (2007)

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus
por: Sansaloni, Carolina P, et al.
Publicado: (2010)

Cluster stability scores for microarray data in cancer studies
por: Smolkin, Mark, et al.
Publicado: (2003)

Application of protein lysate microarrays to molecular marker verification and quantification
por: Ramaswamy, Anitha, et al.
Publicado: (2005)

Critique of the pairwise method for estimating qPCR amplification efficiency: beware of correlated data!
por: Tellinghuisen, Joel
Publicado: (2020)

Applicability of RNA standards for evaluating RT-qPCR assays and platforms
por: Devonshire, Alison S, et al.
Publicado: (2011)

Microarray data mining using landmark gene-guided clustering
por: Chopra, Pankaj, et al.
Publicado: (2008)

NIFTI: An evolutionary approach for finding number of clusters in microarray data
por: Jonnalagadda, Sudhakar, et al.
Publicado: (2009)

Sample-ready multiplex qPCR assay for detection of malaria
por: Kamau, Edwin, et al.
Publicado: (2014)

An efficient algorithm for the stochastic simulation of the hybridization of DNA to microarrays
por: Arslan, Erdem, et al.
Publicado: (2009)

Unaccounted uncertainty from qPCR efficiency estimates entails uncontrolled false positive rates
por: Bilgrau, Anders E., et al.
Publicado: (2016)

Development and application of an AllGlo probe-based qPCR assay for detecting knockdown resistance (kdr) mutations in Anopheles sinensis
por: Bai, Liang, et al.
Publicado: (2014)

Statistical significance for hierarchical clustering in genetic association and microarray expression studies
por: Levenstien, Mark A, et al.
Publicado: (2003)

Difference-based clustering of short time-course microarray data with replicates
por: Kim, Jihoon, et al.
Publicado: (2007)

Hybrid clustering for microarray image analysis combining intensity and shape features
por: Rahnenführer, Jörg, et al.
Publicado: (2004)

Reuse of imputed data in microarray analysis increases imputation efficiency
por: Kim, Ki-Yeol, et al.
Publicado: (2004)

Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
por: Lu, Chao
Publicado: (2004)

Use of high throughput qPCR screening to rapidly clone low frequency tumour specific T-cells from peripheral blood for adoptive immunotherapy
por: Kammula, Udai S, et al.
Publicado: (2008)

Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping
por: Li, Baowei, et al.
Publicado: (2021)

A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data
por: van Hijum, Sacha AFT, et al.
Publicado: (2005)

Rapid quantification of plant-powdery mildew interactions by qPCR and conidiospore counts
por: Weßling, Ralf, et al.
Publicado: (2012)

Development of a universal endogenous qPCR control for eukaryotic DNA samples
por: Mittelberger, Cecilia, et al.
Publicado: (2020)

FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data
por: Fu, Limin, et al.
Publicado: (2007)

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
por: Cooke, Emma J, et al.
Publicado: (2011)

SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea
por: Coetzer, Nanette, et al.
Publicado: (2010)

Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm
por: Leclercq, India, et al.
Publicado: (2010)

Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice
por: Edwards, Jeremy D, et al.
Publicado: (2008)

Reference genes for normalization of qPCR assays in sugarcane plants under water deficit
por: de Andrade, Larissa Mara, et al.
Publicado: (2017)

MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering
por: Kim, Eun-Youn, et al.
Publicado: (2009)

Application of functional genomics to the chimeric mouse model of HCV infection: optimization of microarray protocols and genomics analysis
por: Walters, Kathie-Anne, et al.
Publicado: (2006)

Improved filtering of DNA methylation microarray data by detection p values and its impact on downstream analyses
por: Heiss, Jonathan A., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_148o0l83pbljqj7uegm6im1k16