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Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish

BACKGROUND: Bioconcentration factor (BCF) describes the behaviour of a chemical in terms of its likelihood of concentrating in organisms in the environment. It is a fundamental property in recent regulations, such as the European Community Regulation on chemicals and their safe use or the Globally H...

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Autores principales: Lombardo, Anna, Roncaglioni, Alessandra, Boriani, Elena, Milan, Chiara, Benfenati, Emilio
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913328/
https://www.ncbi.nlm.nih.gov/pubmed/20678180
http://dx.doi.org/10.1186/1752-153X-4-S1-S1
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author Lombardo, Anna
Roncaglioni, Alessandra
Boriani, Elena
Milan, Chiara
Benfenati, Emilio
author_facet Lombardo, Anna
Roncaglioni, Alessandra
Boriani, Elena
Milan, Chiara
Benfenati, Emilio
author_sort Lombardo, Anna
collection PubMed
description BACKGROUND: Bioconcentration factor (BCF) describes the behaviour of a chemical in terms of its likelihood of concentrating in organisms in the environment. It is a fundamental property in recent regulations, such as the European Community Regulation on chemicals and their safe use or the Globally Harmonized System for classification, labelling and packaging. These new regulations consider the possibility of reducing or waiving animal tests using alternative methods, such as in silico methods. This study assessed and validated the CAESAR predictive model for BCF in fish. RESULTS: To validate the model, new experimental data were collected and used to create an external set, as a second validation set (a first validation exercise had been done just after model development). The performance of the model was compared with BCFBAF v3.00. For continuous values and for classification purposes the CAESAR BCF model gave better results than BCFBAF v3.00 for the chemicals in the applicability domain of the model. R(2 )and Q(2 )were good and accuracy in classification higher than 90%. Applying an offset of 0.5 to the compounds predicted with BCF close to the thresholds, the number of false negatives (the most dangerous errors) dropped considerably (less than 0.6% of chemicals). CONCLUSIONS: The CAESAR model for BCF is useful for regulatory purposes because it is robust, reliable and predictive. It is also fully transparent and documented and has a well-defined applicability domain, as required by REACH. The model is freely available on the CAESAR web site and easy to use. The reliability of the model reporting the six most similar compounds found in the CAESAR dataset, and their experimental and predicted values, can be evaluated.
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spelling pubmed-29133282010-08-02 Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish Lombardo, Anna Roncaglioni, Alessandra Boriani, Elena Milan, Chiara Benfenati, Emilio Chem Cent J Proceedings BACKGROUND: Bioconcentration factor (BCF) describes the behaviour of a chemical in terms of its likelihood of concentrating in organisms in the environment. It is a fundamental property in recent regulations, such as the European Community Regulation on chemicals and their safe use or the Globally Harmonized System for classification, labelling and packaging. These new regulations consider the possibility of reducing or waiving animal tests using alternative methods, such as in silico methods. This study assessed and validated the CAESAR predictive model for BCF in fish. RESULTS: To validate the model, new experimental data were collected and used to create an external set, as a second validation set (a first validation exercise had been done just after model development). The performance of the model was compared with BCFBAF v3.00. For continuous values and for classification purposes the CAESAR BCF model gave better results than BCFBAF v3.00 for the chemicals in the applicability domain of the model. R(2 )and Q(2 )were good and accuracy in classification higher than 90%. Applying an offset of 0.5 to the compounds predicted with BCF close to the thresholds, the number of false negatives (the most dangerous errors) dropped considerably (less than 0.6% of chemicals). CONCLUSIONS: The CAESAR model for BCF is useful for regulatory purposes because it is robust, reliable and predictive. It is also fully transparent and documented and has a well-defined applicability domain, as required by REACH. The model is freely available on the CAESAR web site and easy to use. The reliability of the model reporting the six most similar compounds found in the CAESAR dataset, and their experimental and predicted values, can be evaluated. BioMed Central 2010-07-29 /pmc/articles/PMC2913328/ /pubmed/20678180 http://dx.doi.org/10.1186/1752-153X-4-S1-S1 Text en Copyright ©2010 Lombardo et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Lombardo, Anna
Roncaglioni, Alessandra
Boriani, Elena
Milan, Chiara
Benfenati, Emilio
Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish
title Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish
title_full Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish
title_fullStr Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish
title_full_unstemmed Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish
title_short Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish
title_sort assessment and validation of the caesar predictive model for bioconcentration factor (bcf) in fish
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913328/
https://www.ncbi.nlm.nih.gov/pubmed/20678180
http://dx.doi.org/10.1186/1752-153X-4-S1-S1
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