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A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants

BACKGROUND: The study of the prehistoric origins and dispersal routes of domesticated plants is often based on the analysis of either archaeobotanical or genetic data. As more data become available, spatially explicit models of crop dispersal can be used to combine different types of evidence. METHO...

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Detalles Bibliográficos
Autores principales: van Etten, Jacob, Hijmans, Robert J.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920323/
https://www.ncbi.nlm.nih.gov/pubmed/20711460
http://dx.doi.org/10.1371/journal.pone.0012060
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author van Etten, Jacob
Hijmans, Robert J.
author_facet van Etten, Jacob
Hijmans, Robert J.
author_sort van Etten, Jacob
collection PubMed
description BACKGROUND: The study of the prehistoric origins and dispersal routes of domesticated plants is often based on the analysis of either archaeobotanical or genetic data. As more data become available, spatially explicit models of crop dispersal can be used to combine different types of evidence. METHODOLOGY/PRINCIPAL FINDINGS: We present a model in which a crop disperses through a landscape that is represented by a conductance matrix. From this matrix, we derive least-cost distances from the geographical origin of the crop and use these to predict the age of archaeological crop remains and the heterozygosity of crop populations. We use measures of the overlap and divergence of dispersal trajectories to predict genetic similarity between crop populations. The conductance matrix is constructed from environmental variables using a number of parameters. Model parameters are determined with multiple-criteria optimization, simultaneously fitting the archaeobotanical and genetic data. The consilience reached by the model is the extent to which it converges around solutions optimal for both archaeobotanical and genetic data. We apply the modelling approach to the dispersal of maize in the Americas. CONCLUSIONS/SIGNIFICANCE: The approach makes possible the integrative inference of crop dispersal processes, while controlling model complexity and computational requirements.
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spelling pubmed-29203232010-08-13 A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants van Etten, Jacob Hijmans, Robert J. PLoS One Research Article BACKGROUND: The study of the prehistoric origins and dispersal routes of domesticated plants is often based on the analysis of either archaeobotanical or genetic data. As more data become available, spatially explicit models of crop dispersal can be used to combine different types of evidence. METHODOLOGY/PRINCIPAL FINDINGS: We present a model in which a crop disperses through a landscape that is represented by a conductance matrix. From this matrix, we derive least-cost distances from the geographical origin of the crop and use these to predict the age of archaeological crop remains and the heterozygosity of crop populations. We use measures of the overlap and divergence of dispersal trajectories to predict genetic similarity between crop populations. The conductance matrix is constructed from environmental variables using a number of parameters. Model parameters are determined with multiple-criteria optimization, simultaneously fitting the archaeobotanical and genetic data. The consilience reached by the model is the extent to which it converges around solutions optimal for both archaeobotanical and genetic data. We apply the modelling approach to the dispersal of maize in the Americas. CONCLUSIONS/SIGNIFICANCE: The approach makes possible the integrative inference of crop dispersal processes, while controlling model complexity and computational requirements. Public Library of Science 2010-08-11 /pmc/articles/PMC2920323/ /pubmed/20711460 http://dx.doi.org/10.1371/journal.pone.0012060 Text en van Etten, Hijmans. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
van Etten, Jacob
Hijmans, Robert J.
A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
title A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
title_full A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
title_fullStr A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
title_full_unstemmed A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
title_short A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
title_sort geospatial modelling approach integrating archaeobotany and genetics to trace the origin and dispersal of domesticated plants
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920323/
https://www.ncbi.nlm.nih.gov/pubmed/20711460
http://dx.doi.org/10.1371/journal.pone.0012060
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