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A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants
BACKGROUND: The study of the prehistoric origins and dispersal routes of domesticated plants is often based on the analysis of either archaeobotanical or genetic data. As more data become available, spatially explicit models of crop dispersal can be used to combine different types of evidence. METHO...
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920323/ https://www.ncbi.nlm.nih.gov/pubmed/20711460 http://dx.doi.org/10.1371/journal.pone.0012060 |
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author | van Etten, Jacob Hijmans, Robert J. |
author_facet | van Etten, Jacob Hijmans, Robert J. |
author_sort | van Etten, Jacob |
collection | PubMed |
description | BACKGROUND: The study of the prehistoric origins and dispersal routes of domesticated plants is often based on the analysis of either archaeobotanical or genetic data. As more data become available, spatially explicit models of crop dispersal can be used to combine different types of evidence. METHODOLOGY/PRINCIPAL FINDINGS: We present a model in which a crop disperses through a landscape that is represented by a conductance matrix. From this matrix, we derive least-cost distances from the geographical origin of the crop and use these to predict the age of archaeological crop remains and the heterozygosity of crop populations. We use measures of the overlap and divergence of dispersal trajectories to predict genetic similarity between crop populations. The conductance matrix is constructed from environmental variables using a number of parameters. Model parameters are determined with multiple-criteria optimization, simultaneously fitting the archaeobotanical and genetic data. The consilience reached by the model is the extent to which it converges around solutions optimal for both archaeobotanical and genetic data. We apply the modelling approach to the dispersal of maize in the Americas. CONCLUSIONS/SIGNIFICANCE: The approach makes possible the integrative inference of crop dispersal processes, while controlling model complexity and computational requirements. |
format | Text |
id | pubmed-2920323 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-29203232010-08-13 A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants van Etten, Jacob Hijmans, Robert J. PLoS One Research Article BACKGROUND: The study of the prehistoric origins and dispersal routes of domesticated plants is often based on the analysis of either archaeobotanical or genetic data. As more data become available, spatially explicit models of crop dispersal can be used to combine different types of evidence. METHODOLOGY/PRINCIPAL FINDINGS: We present a model in which a crop disperses through a landscape that is represented by a conductance matrix. From this matrix, we derive least-cost distances from the geographical origin of the crop and use these to predict the age of archaeological crop remains and the heterozygosity of crop populations. We use measures of the overlap and divergence of dispersal trajectories to predict genetic similarity between crop populations. The conductance matrix is constructed from environmental variables using a number of parameters. Model parameters are determined with multiple-criteria optimization, simultaneously fitting the archaeobotanical and genetic data. The consilience reached by the model is the extent to which it converges around solutions optimal for both archaeobotanical and genetic data. We apply the modelling approach to the dispersal of maize in the Americas. CONCLUSIONS/SIGNIFICANCE: The approach makes possible the integrative inference of crop dispersal processes, while controlling model complexity and computational requirements. Public Library of Science 2010-08-11 /pmc/articles/PMC2920323/ /pubmed/20711460 http://dx.doi.org/10.1371/journal.pone.0012060 Text en van Etten, Hijmans. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article van Etten, Jacob Hijmans, Robert J. A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants |
title | A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants |
title_full | A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants |
title_fullStr | A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants |
title_full_unstemmed | A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants |
title_short | A Geospatial Modelling Approach Integrating Archaeobotany and Genetics to Trace the Origin and Dispersal of Domesticated Plants |
title_sort | geospatial modelling approach integrating archaeobotany and genetics to trace the origin and dispersal of domesticated plants |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920323/ https://www.ncbi.nlm.nih.gov/pubmed/20711460 http://dx.doi.org/10.1371/journal.pone.0012060 |
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