Cargando…

Continuous-time modeling of cell fate determination in Arabidopsis flowers

BACKGROUND: The genetic control of floral organ specification is currently being investigated by various approaches, both experimentally and through modeling. Models and simulations have mostly involved boolean or related methods, and so far a quantitative, continuous-time approach has not been expl...

Descripción completa

Detalles Bibliográficos
Autores principales:	van Mourik, Simon, van Dijk, Aalt DJ, de Gee, Maarten, Immink, Richard GH, Kaufmann, Kerstin, Angenent, Gerco C, van Ham, Roeland CHJ, Molenaar, Jaap
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2922098/ https://www.ncbi.nlm.nih.gov/pubmed/20649974 http://dx.doi.org/10.1186/1752-0509-4-101

Ejemplares similares

A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network
por: Leal Valentim, Felipe, et al.
Publicado: (2015)

Simulation of Organ Patterning on the Floral Meristem Using a Polar Auxin Transport Model
por: van Mourik, Simon, et al.
Publicado: (2012)

Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data
por: Severing, Edouard I, et al.
Publicado: (2011)

Conserved and variable correlated mutations in the plant MADS protein network
por: van Dijk, Aalt DJ, et al.
Publicado: (2010)

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination
por: van Es, Sam W., et al.
Publicado: (2019)

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions
por: Muiño, Jose M, et al.
Publicado: (2011)

Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade
por: van Mourik, Hilda, et al.
Publicado: (2017)

Floral pathway integrator gene expression mediates gradual transmission of environmental and endogenous cues to flowering time
por: van Dijk, Aalt D.J., et al.
Publicado: (2017)

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana
por: Aerts, Niels, et al.
Publicado: (2018)

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome
por: Severing, Edouard I, et al.
Publicado: (2009)

Correlated mutations via regularized multinomial regression
por: Sreekumar, Janardanan, et al.
Publicado: (2011)

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction
por: van Dijk, Aalt D. J., et al.
Publicado: (2010)

Structural determinants of DNA recognition by plant MADS-domain transcription factors
por: Muiño, Jose M., et al.
Publicado: (2014)

In planta localisation patterns of MADS domain proteins during floral development in Arabidopsis thaliana
por: Urbanus, Susan L, et al.
Publicado: (2009)

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation
por: Immink, Richard GH, et al.
Publicado: (2009)

FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture
por: Bemer, Marian, et al.
Publicado: (2017)

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family
por: Danisman, Selahattin, et al.
Publicado: (2013)

Mutational Robustness of Gene Regulatory Networks
por: van Dijk, Aalt D. J., et al.
Publicado: (2012)

Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
por: Kaufmann, Kerstin, et al.
Publicado: (2009)

Tetramer formation in Arabidopsis MADS domain proteins: analysis of a protein-protein interaction network
por: Espinosa-Soto, Carlos, et al.
Publicado: (2014)

Novel functions of the Arabidopsis transcription factor TCP5 in petal development and ethylene biosynthesis
por: van Es, Sam W., et al.
Publicado: (2018)

A plant-based chemical genomics screen for the identification of flowering inducers
por: Fiers, Martijn, et al.
Publicado: (2017)

Identifying Optimal Models to Represent Biochemical Systems
por: Apri, Mochamad, et al.
Publicado: (2014)

Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function
por: Severing, Edouard I., et al.
Publicado: (2012)

Inferring the Gene Network Underlying the Branching of Tomato Inflorescence
por: Astola, Laura, et al.
Publicado: (2014)

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments
por: Muiño, Jose M., et al.
Publicado: (2011)

In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity
por: van der Burgt, Ate, et al.
Publicado: (2009)

Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants
por: Pajoro, A., et al.
Publicado: (2017)

Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway
por: Balanzà, Vicente, et al.
Publicado: (2018)

A cautionary note on the use of chromosome conformation capture in plants
por: Jamge, Suraj, et al.
Publicado: (2017)

Arabidopsis thaliana ambient temperature responsive lncRNAs
por: Severing, Edouard, et al.
Publicado: (2018)

Tagging of MADS domain proteins for chromatin immunoprecipitation
por: de Folter, Stefan, et al.
Publicado: (2007)

High-throughput bioinformatics with the Cyrille2 pipeline system
por: Fiers, Mark WEJ, et al.
Publicado: (2008)

Architecture of gene regulatory networks controlling flower development in Arabidopsis thaliana
por: Chen, Dijun, et al.
Publicado: (2018)

Prediction uncertainty assessment of a systems biology model requires a sample of the full probability distribution of its parameters
por: van Mourik, Simon, et al.
Publicado: (2014)

Allermatch™, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines
por: Fiers, Mark WEJ, et al.
Publicado: (2004)

TM3 and STM3 Promote Flowering Together with FUL2 and MBP20, but Act Antagonistically in Inflorescence Branching in Tomato
por: Zahn, Iris E., et al.
Publicado: (2023)

Efficient Estimation of the Robustness Region of Biological Models with Oscillatory Behavior
por: Apri, Mochamad, et al.
Publicado: (2010)

Beyond sequence: Structure-based machine learning
por: Durairaj, Janani, et al.
Publicado: (2022)

Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana
por: Leal Valentim, Felipe, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_sv9qvbmevr30emevf53qo0qe8m