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Deriving enzymatic and taxonomic signatures of metagenomes from short read data

BACKGROUND: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide candidates. We search for occurrences of Specific Peptides (SPs) on the latter. SPs are peptides that are indicative of enzym...

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Detalles Bibliográficos
Autores principales: Weingart, Uri, Persi, Erez, Gophna, Uri, Horn, David
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2922197/
https://www.ncbi.nlm.nih.gov/pubmed/20649951
http://dx.doi.org/10.1186/1471-2105-11-390

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