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Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems

Conformations and catalytic rates of enzymes fluctuate over a wide range of timescales. Despite these fluctuations, there exist some limiting cases in which the enzymatic catalytic rate follows the macroscopic rate equation such as the Michaelis-Menten law. In this paper we investigate the applicabi...

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Autores principales: Chaudhury, Srabanti, Igoshin, Oleg A.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2927515/
https://www.ncbi.nlm.nih.gov/pubmed/20808776
http://dx.doi.org/10.1371/journal.pone.0012364
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author Chaudhury, Srabanti
Igoshin, Oleg A.
author_facet Chaudhury, Srabanti
Igoshin, Oleg A.
author_sort Chaudhury, Srabanti
collection PubMed
description Conformations and catalytic rates of enzymes fluctuate over a wide range of timescales. Despite these fluctuations, there exist some limiting cases in which the enzymatic catalytic rate follows the macroscopic rate equation such as the Michaelis-Menten law. In this paper we investigate the applicability of macroscopic rate laws for fluctuating enzyme systems in which catalytic transitions are slower than ligand binding-dissociation reactions. In this quasi-equilibrium limit, for an arbitrary reaction scheme we show that the catalytic rate has the same dependence on ligand concentrations as obtained from mass-action kinetics even in the presence of slow conformational fluctuations. These results indicate that the timescale of conformational dynamics – no matter how slow – will not affect the enzymatic rate in quasi-equilibrium limit. Our numerical results for two enzyme-catalyzed reaction schemes involving multiple substrates and inhibitors further support our general theory.
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spelling pubmed-29275152010-08-31 Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems Chaudhury, Srabanti Igoshin, Oleg A. PLoS One Research Article Conformations and catalytic rates of enzymes fluctuate over a wide range of timescales. Despite these fluctuations, there exist some limiting cases in which the enzymatic catalytic rate follows the macroscopic rate equation such as the Michaelis-Menten law. In this paper we investigate the applicability of macroscopic rate laws for fluctuating enzyme systems in which catalytic transitions are slower than ligand binding-dissociation reactions. In this quasi-equilibrium limit, for an arbitrary reaction scheme we show that the catalytic rate has the same dependence on ligand concentrations as obtained from mass-action kinetics even in the presence of slow conformational fluctuations. These results indicate that the timescale of conformational dynamics – no matter how slow – will not affect the enzymatic rate in quasi-equilibrium limit. Our numerical results for two enzyme-catalyzed reaction schemes involving multiple substrates and inhibitors further support our general theory. Public Library of Science 2010-08-24 /pmc/articles/PMC2927515/ /pubmed/20808776 http://dx.doi.org/10.1371/journal.pone.0012364 Text en Chaudhury, Igoshin. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Chaudhury, Srabanti
Igoshin, Oleg A.
Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems
title Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems
title_full Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems
title_fullStr Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems
title_full_unstemmed Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems
title_short Dynamic Disorder in Quasi-Equilibrium Enzymatic Systems
title_sort dynamic disorder in quasi-equilibrium enzymatic systems
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2927515/
https://www.ncbi.nlm.nih.gov/pubmed/20808776
http://dx.doi.org/10.1371/journal.pone.0012364
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